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SCNpilot_expt_1000_bf_scaffold_1393

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1393_1
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..407)
DNA (405bp) protein (135aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PW15_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF74358.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1393_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

892..1509
DNA (618bp) protein (206aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
acpD; ACP phosphodiesterase; K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-] rbh
FMN-dependent NADH-azoreductase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F3M0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1393_3
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1612..1932)
DNA (321bp) protein (107aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JEC4_AGRRK
Transcriptional activator HlyU {ECO:0000313|EMBL:CDN53687.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1393_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1988..3238)
DNA (1251bp) protein (417aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Threonineeeeeeeeeee dehydratase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V797_9RHIZ rbh
ilvA; threonine dehydratase rbh
SCNpilot_expt_1000_bf_scaffold_1393_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3344..4798
DNA (1455bp) protein (485aa)
Trk system potassium uptake protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AB58_RHIRD rbh
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Potassium uptake protein rbh
SCNpilot_expt_1000_bf_scaffold_1393_6
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4917..5516
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI00037C6FC2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR60221.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_1393_7
unknown

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comp(5562..5795)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1393_8
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6156..8198)
DNA (2043bp) protein (681aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PH60_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1393_9
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8972..10033)
DNA (1062bp) protein (354aa)
Protein RecA n=3 Tax=Rhizobium RepID=K0WEG6_9RHIZ rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
recA; recombinase A; K03553 recombination protein RecA rbh
SCNpilot_expt_1000_bf_scaffold_1393_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10212..11219
DNA (1008bp) protein (336aa)
Sugar kinase, ribokinase n=1 Tax=Rhizobium sp. CF142 RepID=J2KWH8_9RHIZ
Sugar kinase, ribokinase {ECO:0000313|EMBL:EJJ25129.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
carbohydrate kinase
SCNpilot_expt_1000_bf_scaffold_1393_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11254..12180
DNA (927bp) protein (309aa)
Pseudouridine-5'-phosphate glycosidase {ECO:0000256|HAMAP-Rule:MF_01876}; Short=PsiMP glycosidase {ECO:0000256|HAMAP-Rule:MF_01876};; EC=4.2.1.70 {ECO:0000256|HAMAP-Rule:MF_01876};; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
Pseudouridine-5'-phosphate glycosidase n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A9H9_RHIET rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1393_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12382..14994)
DNA (2613bp) protein (871aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMP0_RHITR rbh
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:AGB71374.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
multi-sensor hybrid histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_1393_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15309..16361
DNA (1053bp) protein (351aa)
Chemotaxis protein histidine kinase-like protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BK70_RHILV
Flagellar biosynthesis protein FliO {ECO:0000313|EMBL:AHF84237.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1393_14
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17231..17695)
DNA (465bp) protein (155aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JWY3_AGRVS
dksA; RNA polymerase-binding protein DksA; K06204 DnaK suppressor protein
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1393_15
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17929..18429
DNA (501bp) protein (167aa)
Phosphohistidine phosphatase SixA n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HHC4_9RHIZ
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EPE98139.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
phosphohistidine phosphatase
SCNpilot_expt_1000_bf_scaffold_1393_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18497..20035
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V7Q2_9RHIZ rbh
Amino acid regulated cytosolic protein {ECO:0000313|EMBL:KGE00463.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
amino acid regulated cytosolic protein rbh
SCNpilot_expt_1000_bf_scaffold_1393_17
unknown

Not on your lists

comp(19873..20640)
DNA (768bp) protein (256aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1393_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21287..21832
DNA (546bp) protein (182aa)
Uncharacterized protein n=3 Tax=Rhizobium leguminosarum RepID=C6AZQ3_RHILS
hypothetical protein
Conserved hypothetical exported protein {ECO:0000313|EMBL:CAK08135.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1393_19
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21889..22338)
DNA (450bp) protein (150aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Rhizobium mongolense RepID=UPI0003B7AA99
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:KGE00460.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
SCNpilot_expt_1000_bf_scaffold_1393_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22400..22768)
DNA (369bp) protein (123aa)
folB; dihydroneopterin aldolase FolB (EC:4.1.2.25)
Dihydroneopterin aldolase FolB n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X9S2_RHIFR
Dienelactone hydrolase {ECO:0000313|EMBL:KDP74785.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1393_21
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22765..23628)
DNA (864bp) protein (288aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000361B103
folP; dihydropteroate synthase
SCNpilot_expt_1000_bf_scaffold_1393_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23775..24359
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D852_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80059.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1393_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24680..24790)
DNA (111bp) protein (37aa)
Probable ferredoxin, 2fe-2s fdii electron transport iron-sulfur protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J3C1_POLGS
Putative ferredoxin, 2Fe-2S {ECO:0000313|EMBL:AHK44501.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ferredoxin, 2fe-2s fdii electron transport iron-sulfur protein; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_1000_bf_scaffold_1393_24
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25155..25523)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IGU4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE98148.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
sensor histidine kinase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1393_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26004..32669
DNA (6666bp) protein (2222aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2K7R6_RHIEC
Hypothetical conserved protein {ECO:0000313|EMBL:ABC91120.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1393_26
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33743..34357)
DNA (615bp) protein (205aa)
ABC transporter n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DQM8_9RHIZ
ABC transporter {ECO:0000313|EMBL:EJT05476.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1393_27
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34390..35760)
DNA (1371bp) protein (457aa)
Solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. Pop5 RepID=K0VWE9_9RHIZ rbh
Solute-binding component of ABC transporter {ECO:0000313|EMBL:EJZ21790.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
ABC transporter; K02067 putative ABC transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1393_28
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35771..36607)
DNA (837bp) protein (279aa)
iron ABC transporter ATP-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B79278 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJD41461.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1393_29
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36618..37559)
DNA (942bp) protein (314aa)
ABC transporter permease n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QWC2_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:EKF59642.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein; K02066 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1393_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37893..38876
DNA (984bp) protein (328aa)
mandelate racemase n=1 Tax=Rhizobium gallicum RepID=UPI000361CE20 rbh
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJC66647.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
racemase/isomerase rbh
Displaying items 1-30 of 65 in total

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