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SCNpilot_expt_1000_bf_scaffold_1736

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1736_1
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..160
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZZ2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS54014.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_1736_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161..490)
DNA (330bp) protein (110aa)
AsnC family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000372AB81
AsnC family transcriptional regulator protein {ECO:0000313|EMBL:AJD43207.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1736_3
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(493..1383)
DNA (891bp) protein (297aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JLB4_AGRRK rbh
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:GAJ91968.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
transcriptional regulator protein rbh
SCNpilot_expt_1000_bf_scaffold_1736_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1501..2784
DNA (1284bp) protein (428aa)
Oxidoreductase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JLB3_AGRRK rbh
oxidoreductase rbh
Oxidoreductase protein {ECO:0000313|EMBL:ACM28612.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1736_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2894..4432
DNA (1539bp) protein (513aa)
pcd; piperideine-6-carboxylate dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0V6L9_RHILV rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJC68573.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_1736_6
bacterium YEK0313, Bacteria

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comp(4646..6199)
DNA (1554bp) protein (518aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F82CE
Copper-transporting P-type ATPase {ECO:0000313|EMBL:CEJ11414.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_1736_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6199..7083)
DNA (885bp) protein (295aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F82CE
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABE39540.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_1736_8
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7181..8200)
DNA (1020bp) protein (340aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] rbh
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IND1_METNO rbh
SCNpilot_expt_1000_bf_scaffold_1736_9
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8367..9146
DNA (780bp) protein (260aa)
DeoR family transcriptional regulator n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4P7_ACIMA
Uncharacterized protein {ECO:0000313|EMBL:KJS10532.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
DeoR family transcriptional regulator; K02081 DeoR family transcriptional regulator, aga operon transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_1736_10
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9163..10239
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IH51_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:KJS10531.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1736_11
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10275..11018)
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Pseudomonas fluorescens F113 RepID=G8Q8B3_PSEFL rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KFX71743.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
SCNpilot_expt_1000_bf_scaffold_1736_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11015..11371)
DNA (357bp) protein (119aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CDX50159.1}; EC=1.1.1.35 {ECO:0000313|EMBL:CDX50159.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSH0_9PROT
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein
SCNpilot_expt_1000_bf_scaffold_1736_13
unknown

Not on your lists

11524..11682
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1736_14
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11933..12823)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z8J9_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD57362.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1736_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12845..13408)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2YPQ3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDX42092.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_expt_1000_bf_scaffold_1736_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13405..14454)
DNA (1050bp) protein (350aa)
Transcriptional regulator, LacI family n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z7G2_9RHOB rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:CDX14969.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1736_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14478..15764)
DNA (1287bp) protein (429aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
histidinol dehydrogenase (EC:1.1.1.23); K15509 sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] rbh
Histidinol dehydrogenase id=4253863 bin=GWF2_Methylomirabilis_70_14 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
SCNpilot_expt_1000_bf_scaffold_1736_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15839..17056)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035E791F rbh
Monosaccharide ABC transporter substrate-binding protein, CUT2 family {ECO:0000313|EMBL:CDX50148.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter periplasmic ligand binding protein; K02058 simple sugar transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1736_19
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17241..18272)
DNA (1032bp) protein (344aa)
Ribose ABC transport system, permease protein RbsC n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z8J4_9RHOB rbh
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:CDX14976.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1736_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18269..19267)
DNA (999bp) protein (333aa)
Ribose ABC transport system, permease protein RbsC n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2YPP9_9RHOB rbh
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter {ECO:0000313|EMBL:CDX42105.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1736_21
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19267..20841)
DNA (1575bp) protein (525aa)
Ribose ABC transport system, ATP-binding protein RbsA n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z7F7_9RHOB rbh
Ribose ABC transport system, ATP-binding protein RbsA {ECO:0000313|EMBL:GAD57355.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
sugar ABC transporter ATPase subunit rbh
SCNpilot_expt_1000_bf_scaffold_1736_22
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21198..22367)
DNA (1170bp) protein (390aa)
alcohol dehydrogenase; K00100 [EC:1.1.1.-]
NAD-dependent methanol dehydrogenase n=1 Tax=Citreicella sp. SE45 RepID=D0DC99_9RHOB rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KGF70085.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_1736_23
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22386..23219)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=haloarchaeon 3A1_DGR RepID=T0TVR6_9EURY
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:AKI01615.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
potC; spermidine/putrescine ABC transporter, permease component
SCNpilot_expt_1000_bf_scaffold_1736_24
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23219..24094)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI0002F33D83
Uncharacterized protein {ECO:0000313|EMBL:KGF70086.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
putative ABC transporter permease protein
SCNpilot_expt_1000_bf_scaffold_1736_25
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24097..25173)
DNA (1077bp) protein (359aa)
ABC-type spermidine/putrescine transport system, ATPase component {ECO:0000313|EMBL:AKI01613.1}; EC=3.6.3.31 {ECO:0000313|EMBL:AKI01613.1};; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
Putative spermidine/putrescine transporter subunit ATP-binding component of ABC superfamily tranporter n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JJ42_STREN
spermidine/putrescine ABC transporter ATPase subunit
SCNpilot_expt_1000_bf_scaffold_1736_26
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25261..26409)
DNA (1149bp) protein (383aa)
Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) RepID=Q483K7_COLP3 rbh
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:AKI01612.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1736_27
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26452..27795)
DNA (1344bp) protein (448aa)
Glutamine synthetase {ECO:0000313|EMBL:AKI01611.1}; EC=6.3.1.2 {ECO:0000313|EMBL:AKI01611.1};; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FRB6_PELBH
SCNpilot_expt_1000_bf_scaffold_1736_28
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27920..28717
DNA (798bp) protein (266aa)
Putative LuxR family transcriptional regulator n=1 Tax=Octadecabacter antarcticus 307 RepID=M9R8M3_9RHOB
Transcriptional regulator, luxR family {ECO:0000313|EMBL:AKI01610.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
putative LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1736_29
unknown

Not on your lists

28760..28975
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1736_30
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29033..29386
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Agrobacterium RepID=A9CHT6_AGRT5
hypothetical protein; K09790 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGL63092.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
Displaying 30 items

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