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SCNpilot_expt_1000_bf_scaffold_1808

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1808_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..486
DNA (486bp) protein (162aa)
ATPase, AAA family protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M9W8_RHISN
ATPase AAA {ECO:0000313|EMBL:KDP71444.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ATPase, AAA family protein
SCNpilot_expt_1000_bf_scaffold_1808_2
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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670..1602
DNA (933bp) protein (311aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
metA; homoserine O-succinyltransferase (EC:2.3.1.46); K00651 homoserine O-succinyltransferase [EC:2.3.1.46] rbh
Homoserine O-succinyltransferase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XTQ6_RHIRD
SCNpilot_expt_1000_bf_scaffold_1808_3
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1599..2051
DNA (453bp) protein (151aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5F4_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EHS51989.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Histone acetyl transferase
SCNpilot_expt_1000_bf_scaffold_1808_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2058..3242
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JDI6_AGRRK rbh
hypothetical protein; K09989 hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM28315.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1808_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3332..4357
DNA (1026bp) protein (342aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
aldose-1-epimerase, putative (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HAZ5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1808_6
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4523..5116)
DNA (594bp) protein (198aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J2AQC8_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJJ25460.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1808_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5176..6678
DNA (1503bp) protein (501aa)
Arabinose efflux permease family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0CAV7_RHILT rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJC76255.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
major facilitator superfamily protein rbh
SCNpilot_expt_1000_bf_scaffold_1808_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6903..7931
DNA (1029bp) protein (343aa)
Thiamine ABC transporter, periplasmic binding protein n=1 Tax=Rhizobium sp. CF122 RepID=J2ID81_9RHIZ
Thiamine ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:EJL53980.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
tbpA; thiamine transporter substrate binding subunit; K02064 thiamine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1808_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7934..9568
DNA (1635bp) protein (545aa)
Thiamine/thiamine pyrophosphate ABC transporter, permease protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JDY4_AGRRK
Thiamine ABC transporter permease protein {ECO:0000313|EMBL:GAJ92502.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
thiP; thiamine transporter membrane protein; K02063 thiamine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1808_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9558..10292
DNA (735bp) protein (245aa)
Thiamine import ATP-binding protein ThiQ {ECO:0000256|HAMAP-Rule:MF_01723}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01723};; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Thiamine ABC transporter, ATP-binding protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JDY5_AGRRK
thiQ; thiamine ABC transporter ATP-binding protein; K02062 thiamine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1808_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10559..12097
DNA (1539bp) protein (513aa)
metalloprotease; K01417 [EC:3.4.24.-]
Putative Zn-dependent protease n=1 Tax=Rhizobium sp. CF142 RepID=J2KWA1_9RHIZ
Putative Zn-dependent protease {ECO:0000313|EMBL:EJJ25462.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1808_12
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12174..12608)
DNA (435bp) protein (145aa)
RNA polymerase sigma factor n=2 Tax=Rhizobium etli RepID=Q2K316_RHIEC
rpoH2; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1808_13
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13234..13803)
DNA (570bp) protein (190aa)
CarD family transcriptional regulator n=2 Tax=Rhizobium RepID=K5DTX5_RHILU rbh
putative transcriptional regulatory protein, CarD family rbh
Putative transcriptional regulatory protein, CarD family {ECO:0000313|EMBL:CDI09732.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_1808_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14200..14538)
DNA (339bp) protein (113aa)
Ferredoxin II n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U1E2_9RHIZ
Ferredoxin {ECO:0000313|EMBL:EYR78953.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ferredoxin-1 (Ferredoxin I) (FdI)
SCNpilot_expt_1000_bf_scaffold_1808_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14762..15166)
DNA (405bp) protein (135aa)
RNA-binding protein S4 n=1 Tax=Rhizobium phaseoli RepID=UPI00030E7C90
heat shock protein (ribosome-associated); K04762 ribosome-associated heat shock protein Hsp15
Putative heat shock protein (Ribosome-associated) {ECO:0000313|EMBL:ACE93239.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1808_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15171..16898)
DNA (1728bp) protein (576aa)
ATP-dependent DNA helicase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS16_RHITR
ATP-dependent DNA helicase
ATP-dependent DNA helicase {ECO:0000313|EMBL:AGB72959.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 16 items

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