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SCNpilot_expt_1000_bf_scaffold_1895

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1895_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1208)
DNA (1206bp) protein (402aa)
ATP-dependent RNA helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U543_RHIRD
RNA helicase {ECO:0000313|EMBL:KGE01235.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_1895_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1552..3138)
DNA (1587bp) protein (529aa)
hypothetical protein; K14083 trimethylamine methyltransferase [EC:2.1.1.-] rbh
Trimethylamine:corrinoid methyltransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2DM98_9RHIZ rbh
Trimethylamine:corrinoid methyltransferase {ECO:0000313|EMBL:EJK84042.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1895_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3337..7230
DNA (3894bp) protein (1298aa)
PAS domain S-box n=1 Tax=Rhizobium sp. CF080 RepID=J2JCV0_9RHIZ rbh
Histidine kinase {ECO:0000313|EMBL:KGE01232.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
PAS domain S-box rbh
SCNpilot_expt_1000_bf_scaffold_1895_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7253..7966)
DNA (714bp) protein (238aa)
Putative tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMU8_RHITR
putative tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC
Putative tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC {ECO:0000313|EMBL:AGB72036.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1895_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7968..9149
DNA (1182bp) protein (394aa)
goxB; glycine oxidase (EC:1.4.3.19); K03153 glycine oxidase [EC:1.4.3.19] rbh
Putative glycine oxidase {ECO:0000313|EMBL:CAK09078.1}; EC=1.4.3.19 {ECO:0000313|EMBL:CAK09078.1};; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
D-amino acid oxidase n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003781672 rbh
SCNpilot_expt_1000_bf_scaffold_1895_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9306..10013
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2SZ73_9RHIZ rbh
Phosphonate metabolism protein {ECO:0000313|EMBL:CDN55006.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1895_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10109..11035
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PW83_9RHIZ rbh
fragment of conserved hypothetical protein; putative Polysaccharide deacetylase family protein (part 1) rbh
Putative urate catabolism protein {ECO:0000313|EMBL:EJC77346.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1895_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11032..11529
DNA (498bp) protein (166aa)
OHCU decarboxylase n=1 Tax=Rhizobium sp. CF080 RepID=J2SZ66_9RHIZ
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase protein {ECO:0000313|EMBL:AIC28488.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
OHCU decarboxylase
SCNpilot_expt_1000_bf_scaffold_1895_9
unknown

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11618..12241
DNA (624bp) protein (208aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1895_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12358..12549
DNA (192bp) protein (64aa)
Probable allantoicase {ECO:0000256|HAMAP-Rule:MF_00813}; EC=3.5.3.4 {ECO:0000256|HAMAP-Rule:MF_00813};; Allantoate amidinohydrolase {ECO:0000256|HAMAP-Rule:MF_00813}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
alc; allantoicase (Allantoate amidinohydrolase) (EC:3.5.3.4)
Probable allantoicase n=1 Tax=Rhizobium sp. CF142 RepID=J2KZ78_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1895_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12607..12753
DNA (147bp) protein (49aa)
DNA polymerase, beta domain-containing protein region n=2 Tax=Rhizobium RepID=U4Q9T4_9RHIZ
DNA polymerase, beta domain-containing protein region
Uncharacterized protein {ECO:0000313|EMBL:EMS95437.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
Displaying 11 items

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