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SCNpilot_expt_1000_bf_scaffold_1909

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1909_1
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1167
DNA (1167bp) protein (389aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase, thermostable n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q204_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EXL06518.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_1909_2
unknown

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1483..2070
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1909_3
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2359..3513
DNA (1155bp) protein (385aa)
ABC transporter substrate binding protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1I0_AGRVS rbh
Uncharacterized protein {ECO:0000313|EMBL:GAK71938.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1909_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3510..4100
DNA (591bp) protein (197aa)
Response regulator antiterminator domain-containing protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H9_AGRVS rbh
Response regulator antiterminator domain-containing protein rbh
Response regulator antiterminator domain-containing protein {ECO:0000313|EMBL:ACM38727.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1909_5
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4685..5011
DNA (327bp) protein (109aa)
hydrolases or acyltransferases (alpha/beta hydrolase superfamily); K01259 proline iminopeptidase [EC:3.4.11.5]
Hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H8_AGRVS
Hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:ACM38726.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1909_6
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5102..6799
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H7_AGRVS rbh
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAK71941.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1909_7
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6883..7920
DNA (1038bp) protein (346aa)
ABC transporter membrane spanning protein (Dipeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H6_AGRVS rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK71942.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
dppC; peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1909_8
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7931..8902
DNA (972bp) protein (324aa)
ABC transporter membrane spanning protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H5_AGRVS rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK71943.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1909_9
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8907..9932
DNA (1026bp) protein (342aa)
ABC transporter nucleotide binding/ATPase protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H4_AGRVS rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAK71944.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ABC transporter nucleotide binding/ATPase (oligopeptide); K02031 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1909_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9929..10918
DNA (990bp) protein (330aa)
ABC transporter nucleotide binding/ATPase protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H3_AGRVS rbh
ABC transporter nucleotide binding/ATPase (oligopeptide); K02032 peptide/nickel transport system ATP-binding protein rbh
ABC transporter nucleotide binding/ATPase protein (Oligopeptide) {ECO:0000313|EMBL:ACM38721.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1909_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10922..11383)
DNA (462bp) protein (154aa)
MarR family transcriptional regulator protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SND6_RHIET
MarR family transcriptional regulator protein
MarR family transcriptional regulator protein {ECO:0000313|EMBL:AGS23164.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1909_12
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11470..12798)
DNA (1329bp) protein (443aa)
ttuD2; hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81] rbh
TtuD3 hydroxypyruvate reductase n=1 Tax=Rhizobium giardinii RepID=UPI0003661BB8 rbh
Hydroxypyruvate reductase {ECO:0000313|EMBL:KEC73079.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_expt_1000_bf_scaffold_1909_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12852..14507)
DNA (1656bp) protein (552aa)
glucose-methanol-choline oxidoreductase; K00119 [EC:1.1.99.-] rbh
alanine-phosphoribitol ligase n=1 Tax=Rhizobium giardinii RepID=UPI0003783B39 rbh
Oxidoreductase {ECO:0000313|EMBL:EGP55868.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
SCNpilot_expt_1000_bf_scaffold_1909_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14639..15406)
DNA (768bp) protein (256aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6E5A0_SINMK rbh
3-oxoacyl-ACP reductase rbh
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EHK74045.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_1909_15
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15403..16908)
DNA (1506bp) protein (502aa)
GMC family oxidoreductase n=1 Tax=Rhizobium giardinii RepID=UPI000381D157 rbh
Dehydrogenase {ECO:0000313|EMBL:KEC73075.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
putative dehydrogenase transmembrane protein rbh
Displaying 15 items

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