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SCNpilot_expt_1000_bf_scaffold_1912

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1912_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..335
DNA (333bp) protein (111aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
Ketol-acid reductoisomerase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A7U8_RHIRD
SCNpilot_expt_1000_bf_scaffold_1912_2
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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573..1796
DNA (1224bp) protein (408aa)
aminotransferase (EC:2.6.1.-) rbh
Transcriptional regulator with HTH domain and aminotransferase domain containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AZH4_9RHIZ rbh
Transcriptional regulator with HTH domain and aminotransferase domain containing protein {ECO:0000313|EMBL:EJJ28980.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1912_3
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1863..3731)
DNA (1869bp) protein (623aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036B3E0F rbh
Uncharacterized protein {ECO:0000313|EMBL:EHS53056.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1912_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3961..4941
DNA (981bp) protein (327aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003772C07 rbh
Solute-binding component of ABC transporter {ECO:0000313|EMBL:EPE97604.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
solute-binding component of ABC transporter; K02012 iron(III) transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1912_5
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4949..6640
DNA (1692bp) protein (564aa)
ABC transporter permease n=1 Tax=Rhizobium mongolense RepID=UPI0003B61033 rbh
ABC transporter permease protein {ECO:0000313|EMBL:AJD41730.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
afuB2; iron(III) ABC transporter; K02011 iron(III) transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1912_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6628..7656
DNA (1029bp) protein (343aa)
Iron(III) ABC transporter, ATP-binding protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UBX9_9RHIZ rbh
Iron(III) ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ENN87653.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Fe(3+) ABC transporter, ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1912_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7730..8104)
DNA (375bp) protein (125aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2H0G5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB96229.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1912_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8347..9453
DNA (1107bp) protein (369aa)
endonuclease n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037A3EEC
Putative extracellular nuclease {ECO:0000313|EMBL:EJJ28604.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
endonuclease/exonuclease/phosphatase family protein
SCNpilot_expt_1000_bf_scaffold_1912_9
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9453..10214
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WH20_9RHIZ
NTP pyrophosphohydrolase
Uncharacterized protein {ECO:0000313|EMBL:EJK82153.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1912_10
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10266..11183
DNA (918bp) protein (306aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Rhizobium sp. AP16 RepID=J2DH69_9RHIZ
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:EJK82152.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
phenazine biosynthesis protein PhzF family
SCNpilot_expt_1000_bf_scaffold_1912_11
unknown

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comp(11615..11893)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1912_12
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11933..13435)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EGF2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDQ02983.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbus indolifex HEL-45.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1912_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13907..14149)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6URW5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN84455.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1912_14
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14666..15667
DNA (1002bp) protein (334aa)
sensor histidine kinase/response regulator hybrid protein (EC:2.7.13.3)
chemotaxis protein CheY n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036FD6A0
Signal transduction histidine kinase {ECO:0000313|EMBL:EJZ17503.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_1912_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15741..16295
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZT44_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI55447.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1912_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16391..18880
DNA (2490bp) protein (830aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000369E14C rbh
Mechanosensitive ion channel protein {ECO:0000313|EMBL:KDP76275.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
mechanosensitive ion channel protein MscS
SCNpilot_expt_1000_bf_scaffold_1912_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19043..19306
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY17_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77823.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1912_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19478..20308
DNA (831bp) protein (277aa)
Response regulator containing a CheY-like receiver domain and a GGDEF domain n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=J0C1C7_RHILT rbh
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:EJC76582.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
response regulator receiver protein rbh
SCNpilot_expt_1000_bf_scaffold_1912_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20459..21478)
DNA (1020bp) protein (340aa)
Transcriptional regulator, AraC family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJF0_RHITR
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AGB71533.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1912_20
unknown

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comp(21787..22002)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1912_21
unknown

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comp(22119..22328)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1912_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22368..23345
DNA (978bp) protein (326aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JGF1_AGRRK rbh
transcriptional regulator protein rbh
Transcriptional regulator protein {ECO:0000313|EMBL:ACM26926.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1912_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23364..25409)
DNA (2046bp) protein (682aa)
Putative electron transfer protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXV8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77813.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Na(+)-translocating NADH-quinone reductase subunit F Na(+)-translocating NQR subunit F; Na(+)-NQR subunit F; NQR complex subunit F; NQR-1 subunit F
SCNpilot_expt_1000_bf_scaffold_1912_24
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25690..25968)
DNA (279bp) protein (93aa)
methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MDU1_RHISN
Putative 5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:ACP25610.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
Displaying 24 items

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