name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1934_1
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..338
|
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-]
Putative metallodependent hydrolase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PVP5_9RHIZ
Putative metallodependent hydrolase {ECO:0000313|EMBL:CCM75620.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
343..1167
|
Metal dependent hydrolase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ADH5_RHIRD
rbh
PhnP {ECO:0000313|EMBL:KDR90989.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
metal dependent hydrolase; K06167 PhnP protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1934_3
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1247..1666)
|
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2CYR7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK82399.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1934_4
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2064..2324)
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V7_PARDP
Short chain dehydrogenase family protein {ECO:0000313|EMBL:AJZ62877.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
short chain dehydrogenase
|
|
SCNpilot_expt_1000_bf_scaffold_1934_5
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2800..3600)
|
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
Probable L-aspartate dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V8_PARDP
|
|
SCNpilot_expt_1000_bf_scaffold_1934_6
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3593..4390)
|
Alpha/beta hydrolase fold protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V9_PARDP
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABL69153.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_7
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4463..4978)
|
Cupin 2, conserved barrel domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0W0_PARDP
cupin
Cupin 2, conserved barrel domain protein {ECO:0000313|EMBL:ABL69154.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_8
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5025..6059)
|
hypothetical protein n=1 Tax=Pseudomonas sp. PAMC 25886 RepID=UPI000287BCCC
rbh
Strain MEJ086 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02084.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
proline racemase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1934_9
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6162..7208)
|
Transcriptional regulator, LacI family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0W3_PARDP
rbh
regulatory protein, LacI; K02529 LacI family transcriptional regulator
rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABL69157.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_10
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7503..8162
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035E80E6
haloacid dehalogenase domain-containing protein hydrolase
Haloacid dehalogenase domain-containing protein hydrolase {ECO:0000313|EMBL:ACR30748.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_11
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8190..9371
|
Major facilitator superfamily protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q1N2_9RHIZ
rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EKF57614.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
major facilitator superfamily MFS_1
|
|
SCNpilot_expt_1000_bf_scaffold_1934_12
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9475..11124
|
Glucose-methanol-choline oxidoreductase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0U8_PARDP
rbh
glucose-methanol-choline oxidoreductase
rbh
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:ABL69142.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_13
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11503..12576
|
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0U9_PARDP
rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ11139.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
periplasmic binding protein/LacI transcriptional regulator
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1934_14
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12642..13442
|
Monosaccharide ABC transporter ATP-binding protein, CUT2 family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V0_PARDP
rbh
Monosaccharide ABC transporter ATP-binding protein, CUT2 family {ECO:0000313|EMBL:ABL69144.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_15
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14754..15719)
|
Transcriptional regulator, LysR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V2_PARDP
rbh
LysR family transcriptional regulator
rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABL69146.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_16
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15837..16823
|
Amidohydrolase 2 n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V3_PARDP
rbh
amidohydrolase; K07046
rbh
Amidohydrolase 2 {ECO:0000313|EMBL:ABL69147.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_17
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16831..18054
|
Amidohydrolase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0V4_PARDP
rbh
amidohydrolase
rbh
Amidohydrolase {ECO:0000313|EMBL:ABL69148.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_18
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18183..18413
|
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UHX7_SINMW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR63257.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_19
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18507..18806
|
Transposase IS4 family protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8I3_9RHIZ
Transposase IS4 family protein {ECO:0000313|EMBL:EKF61515.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
transposase IS4 family protein
|
|
SCNpilot_expt_1000_bf_scaffold_1934_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20031..20996
|
Glycine betaine ABC transporter substrate-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJA5_9RHIZ
rbh
Glycine betaine ABC transporter substrate-binding protein {ECO:0000313|EMBL:EYR78314.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycine betaine ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1934_21
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21096..22112
|
ABC transporter ATP-binding protein; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
ABC transporter ATP-binding protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QWZ1_9RHIZ
rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKF59872.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1934_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22115..24136
|
Glycine betaine/L-proline transport system permease protein ProW n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PG63_9RHIZ
rbh
Glycine betaine transport system permease protein OpuAB {ECO:0000313|EMBL:EYR78312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
proW; glycine betaine/L-proline transport system permease protein ProW; K02001 glycine betaine/proline transport system permease protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1934_23
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24133..25041
|
Choline/ethanolamine kinase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q811_9RHIZ
rbh
Choline/ethanolamine kinase {ECO:0000313|EMBL:EKF59874.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
putative choline kinase involved in LPS biosynthesis
|
|
SCNpilot_expt_1000_bf_scaffold_1934_24
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25038..27446
|
FAD dependent oxidoreductase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q3Z9_9RHIZ
rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EKF59875.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
FAD dependent oxidoreductase
|
|
SCNpilot_expt_1000_bf_scaffold_1934_25
unknown
|
Not on your lists |
comp(27436..28143)
|
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000365FFA6
|
|
SCNpilot_expt_1000_bf_scaffold_1934_26
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28419..29840
|
FAD dependent oxidoreductase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QFN7_9RHIZ
rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:EKF59876.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
sarcosine dehydrogenase
|
|
SCNpilot_expt_1000_bf_scaffold_1934_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29837..30751
|
Choline/ethanolamine kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6Z0_9RHIZ
rbh
Choline/ethanolamine kinase {ECO:0000313|EMBL:EYR78306.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Choline/ethanolamine kinase
|
|
SCNpilot_expt_1000_bf_scaffold_1934_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30757..31224)
|
Putative transcriptional regulator, AsnC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C210_9RHIZ
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:EYR79356.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcription regulator, AsnC-type; K05800 Lrp/AsnC family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_1934_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31344..33422
|
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:EYR79355.1}; EC=1.2.4.4 {ECO:0000313|EMBL:EYR79355.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transketolase; K11381 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4]
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EJR4_9RHIZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_1934_30
Paracoccus sphaerophysae, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33448..33999)
|
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F9DB9
isochorismatase hydrolase
Isochorismatase {ECO:0000313|EMBL:KGJ08218.1}; TaxID=690417 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sphaerophysae.;"
|