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SCNpilot_expt_1000_bf_scaffold_10967

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10967_1
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..152
DNA (150bp) protein (50aa)
Translation initiation factor IF-2 n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U3L3_RHIRD
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|SAAS:SAAS00048520}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
SCNpilot_expt_1000_bf_scaffold_10967_2
unknown

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366..749
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10967_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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903..1310
DNA (408bp) protein (136aa)
Ribosome-binding factor A n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XFC5_RHIFR
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_10967_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1321..2253
DNA (933bp) protein (311aa)
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] rbh
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agro
tRNA pseudouridine synthase B n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JGT2_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_10967_5
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2425..2694
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035EAB11
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_expt_1000_bf_scaffold_10967_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3092..3457
DNA (366bp) protein (122aa)
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
Polyribonucleotide nucleotidyltransferase n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=PNP_RHILW
SCNpilot_expt_1000_bf_scaffold_10967_7
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3480..5150
DNA (1671bp) protein (557aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Rhizobium sp. CF122 RepID=J2I768_9RHIZ
SCNpilot_expt_1000_bf_scaffold_10967_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5150..5269
DNA (120bp) protein (40aa)
polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Polyribonucleotide nucleotidyltransferase n=7 Tax=Sinorhizobium/Ensifer group RepID=G9A5H7_RHIFH
SCNpilot_expt_1000_bf_scaffold_10967_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5616..6335
DNA (720bp) protein (240aa)
rRNA (guanine-N2-)-methyltransferase; K00564 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
16S RNA, methylase RsmC n=1 Tax=Rhizobium sp. CF142 RepID=J2B3W8_9RHIZ
16S RNA, methylase RsmC {ECO:0000313|EMBL:EJJ30675.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_10967_10
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6573..7379)
DNA (807bp) protein (269aa)
enoyl-ACP reductase; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UF36_SINMW rbh
SCNpilot_expt_1000_bf_scaffold_10967_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7386..8606)
DNA (1221bp) protein (407aa)
fabB; 3-oxoacyl-ACP synthase; K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
3-oxoacyl-(Acyl carrier protein) synthase I {ECO:0000313|EMBL:EHK74709.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EHK74709.1};; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
Beta-ketoacyl-acyl-carrier-protein synthase I n=8 Tax=Rhizobium meliloti RepID=F6BVN2_SINMB
SCNpilot_expt_1000_bf_scaffold_10967_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8665..9180)
DNA (516bp) protein (172aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobact
fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase FabA (EC:4.2.1.60) rbh
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XFD4_RHIFR rbh
SCNpilot_expt_1000_bf_scaffold_10967_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9493..9852
DNA (360bp) protein (120aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BJ30_9RHIZ
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EJL51774.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
ferric uptake regulator family protein; K09826 Fur family transcriptional regulator, iron response regulator
Displaying 13 items

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