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SCNpilot_expt_1000_bf_scaffold_11050

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11050_1
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..449)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HV73_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERS13190.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. PN-3.;"
putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_11050_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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821..2884
DNA (2064bp) protein (688aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) id=14626052 bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
SCNpilot_expt_1000_bf_scaffold_11050_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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2910..3125
DNA (216bp) protein (72aa)
Carbon-monoxide dehydrogenase (Acceptor) {ECO:0000313|EMBL:AEA27194.1}; EC=1.2.99.2 {ECO:0000313|EMBL:AEA27194.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Carbon-monoxide dehydrogenase (Acceptor) n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPZ8_PSEUX
carbon-monoxide dehydrogenase
SCNpilot_expt_1000_bf_scaffold_11050_4
Halomonas sp. BC04, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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3122..4003
DNA (882bp) protein (294aa)
molybdopterin dehydrogenase FAD-binding protein; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Molybdopterin dehydrogenase, FAD-binding n=1 Tax=Nocardioides sp. CF8 RepID=R7Y1W7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EWG99308.1}; TaxID=1403540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. BC04.;"
SCNpilot_expt_1000_bf_scaffold_11050_5
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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4000..4308
DNA (309bp) protein (103aa)
(2Fe-2S)-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein n=1 Tax=Rhizobium sp. CF142 RepID=J2LD59_9RHIZ
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ADG88939.1}; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
SCNpilot_expt_1000_bf_scaffold_11050_6
unknown

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4308..4475
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11050_7
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4610..5539
DNA (930bp) protein (310aa)
Hydrophobic amino acid ABC transporter, putative n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8F5E0_MYCSM
hydrophobic amino acid ABC transporter
Hydrophobic amino acid ABC transporter, putative {ECO:0000313|EMBL:ELQ85712.1}; TaxID=1214915 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis MKD8.;"
SCNpilot_expt_1000_bf_scaffold_11050_8
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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5553..5825
DNA (273bp) protein (91aa)
Hydrophobic amino acid ABC transporter, putative n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8F5E0_MYCSM
hydrophobic amino acid ABC transporter
Extracellular ligand-binding receptor {ECO:0000313|EMBL:AFP43124.1}; TaxID=246196 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155).;"
SCNpilot_expt_1000_bf_scaffold_11050_9
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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5924..6793
DNA (870bp) protein (290aa)
ABC-type branched-chain amino acid transport system, permease protein I n=2 Tax=Mycobacterium smegmatis RepID=A0R7E3_MYCS2
ABC-type branched-chain amino acid transport system%2C permease protein I {ECO:0000313|EMBL:CKI67022.1}; TaxID=1772 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis.;"
integral membrane protein NatD
SCNpilot_expt_1000_bf_scaffold_11050_10
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6790..7764
DNA (975bp) protein (325aa)
Branched-chain amino acid ABC transporter permease protein n=1 Tax=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) RepID=A0R7E2_MYCS2 rbh
inner-membrane translocator rbh
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:CKI66993.1}; TaxID=1772 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis.;"
SCNpilot_expt_1000_bf_scaffold_11050_11
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7761..8528
DNA (768bp) protein (256aa)
Branched-chain amino acid transport system ATP-binding protein n=3 Tax=Mycobacterium smegmatis RepID=A0R7E1_MYCS2
amino acid uptake ABC transporter, ATP-binding protein
Branched-chain amino acid transport system ATP-binding protein {ECO:0000313|EMBL:ABK71843.1}; TaxID=246196 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155).;"
SCNpilot_expt_1000_bf_scaffold_11050_12
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

8521..8925
DNA (405bp) protein (135aa)
ABC transporter related protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C6F4_SPHTD
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ACZ39579.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_expt_1000_bf_scaffold_11050_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8898..9188
DNA (291bp) protein (97aa)
amino acid ABC transporter ATPase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003625E17
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_11050_14
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9235..9690
DNA (456bp) protein (152aa)
Carbon monoxide dehydrogenase subunit G n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MF87_9RHIZ
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:KFB11252.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
coxG; Carbon monoxide dehydrogenase subunit G
SCNpilot_expt_1000_bf_scaffold_11050_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9868..11631)
DNA (1764bp) protein (588aa)
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000256|PIRNR:PIRNR000207}; Short=SiR-FP {ECO:0000256|PIRNR:PIRNR000207};; EC=1.8.1.2 {ECO:0000256|PIRNR:PIRNR000207};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cysJ; sulfite reductase [NADPH] flavoprotein subunit alpha (EC:1.8.1.2); K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
Sulfite reductase flavoprotein alpha-component CysJ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTD9_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_11050_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11640..12149)
DNA (510bp) protein (170aa)
Ferredoxin-dependent glutamate synthase 1 {ECO:0000313|EMBL:EYR81275.1}; EC=1.4.7.1 {ECO:0000313|EMBL:EYR81275.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gltB; glutamate synthase large subunit (EC:1.4.1.13); K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase large subunit n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HA00_RHIRD
Displaying 16 items

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