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SCNpilot_expt_1000_bf_scaffold_3219

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3219_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..186
DNA (186bp) protein (62aa)
histidine kinase; K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
Sensor histidine kinase protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5RXT5_RHIET
SCNpilot_expt_1000_bf_scaffold_3219_2
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(251..1018)
DNA (768bp) protein (256aa)
cysteine peptidase, YopT-like; K08599 YopT peptidase [EC:3.4.22.-]
cysteine peptidase, YopT-like protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A5F67
Probable cysteine peptidase, YopT-like {ECO:0000313|EMBL:ABC27630.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
SCNpilot_expt_1000_bf_scaffold_3219_3
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1294..2034)
DNA (741bp) protein (247aa)
cysteine peptidase, YopT-like; K08599 YopT peptidase [EC:3.4.22.-]
cysteine peptidase, YopT-like protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A5F67
Probable cysteine peptidase, YopT-like {ECO:0000313|EMBL:ABC27630.1}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella chejuensis (strain KCTC 2396).;"
SCNpilot_expt_1000_bf_scaffold_3219_4
unknown

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comp(2107..2343)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3219_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2392..2772)
DNA (381bp) protein (127aa)
Diacylglycerol kinase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V7X2_9RHIZ
diacylglycerol kinase
Diacylglycerol kinase {ECO:0000313|EMBL:EPE98212.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_3219_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2856..3872)
DNA (1017bp) protein (339aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosaru
cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] rbh
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Rhizobium phaseoli RepID=UPI0002DF9A94 rbh
SCNpilot_expt_1000_bf_scaffold_3219_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4048..4830
DNA (783bp) protein (261aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
cobS; cobalamin synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
Cobalamin synthase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=COBS_AGRRK
SCNpilot_expt_1000_bf_scaffold_3219_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4884..5105
DNA (222bp) protein (74aa)
Putative Fe-S protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGA9_9RHIZ
Putative Fe-S protein {ECO:0000313|EMBL:EYR83715.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K06938
SCNpilot_expt_1000_bf_scaffold_3219_9
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5102..5803
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5Q7W7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EJT05583.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
hypothetical protein; K06985 aspartyl protease family protein rbh
SCNpilot_expt_1000_bf_scaffold_3219_10
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5826..6410)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J1G3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ESJ07963.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
hypothetical protein; K09965 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3219_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6502..7263)
DNA (762bp) protein (254aa)
ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJ68_RHITR rbh
ABC transporter, permease protein rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_3219_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7260..7667)
DNA (408bp) protein (136aa)
Multidrug ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JG87_AGRRK
hndI; multidrug ABC transporter; K09687 antibiotic transport system ATP-binding protein
Multidrug ABC transporter {ECO:0000313|EMBL:ACM26863.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_3219_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8697..9683)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ensifer adhaerens RepID=I0FX87_ENSAD
Extensin {ECO:0000313|EMBL:KDP74597.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
extensin family protein
SCNpilot_expt_1000_bf_scaffold_3219_14
unknown

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comp(9680..9991)
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3219_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10289..10780
DNA (492bp) protein (164aa)
Invasion protein B, involved in pathogenesis n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EP68_9RHIZ
Invasion protein B, involved in pathogenesis {ECO:0000313|EMBL:EYR83088.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_3219_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10808..11197
DNA (390bp) protein (130aa)
acyl-CoA hydrolase protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0L3_9RHIZ
Thioesterase superfamily protein {ECO:0000313|EMBL:EYR83723.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_3219_17
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11323..12687
DNA (1365bp) protein (455aa)
Peptidase M10A and M12B matrixin and adamalysin n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VL70_CAUST
peptidase M10A/M12b
Peptidase M10A and M12B matrixin and adamalysin {ECO:0000313|EMBL:ADG11243.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_3219_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12703..13056)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VTC6_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC76621.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
transmembrane protein; K09922 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3219_19
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13391..15388
DNA (1998bp) protein (666aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FD93_9RHIZ rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EUB95777.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
GGDEF family protein rbh
SCNpilot_expt_1000_bf_scaffold_3219_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15480..18209
DNA (2730bp) protein (910aa)
UvrABC system protein B n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S4J7_RHIET rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
uvrB; excinuclease ABC subunit B rbh
SCNpilot_expt_1000_bf_scaffold_3219_21
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18601..19290
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HJ58_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESZ60187.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3219_22
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19283..20272
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HKY2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESZ60188.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
ATPase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3219_23
unknown

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comp(20475..20687)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3219_24
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20745..21338)
DNA (594bp) protein (198aa)
molecular chaperone DnaJ n=1 Tax=Rhizobium giardinii RepID=UPI000378BBF6 rbh
DnaJ family heat shock protein {ECO:0000313|EMBL:AJD41554.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
heat shock protein DnaJ domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3219_25
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21918..22130
DNA (213bp) protein (71aa)
Cold shock protein n=3 Tax=Rhizobium RepID=J2IQI8_9RHIZ
Stress protein, member of the CspA-family {ECO:0000313|EMBL:CCM75939.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
cspA; cold shock protein CspA; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_3219_26
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22284..23297)
DNA (1014bp) protein (338aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hypothetical protein; K05539 tRNA-dihydrouridine synthase A [EC:1.-.-.-] rbh
tRNA-dihydrouridine synthase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A9C1_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_3219_27
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23427..24503
DNA (1077bp) protein (359aa)
Shufflon-specific DNA recombinase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8F4_9RHIZ rbh
Shufflon-specific DNA recombinase {ECO:0000313|EMBL:EKF61480.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
integrase family protein rbh
Displaying 27 items

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