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SCNpilot_expt_1000_bf_scaffold_3478

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3478_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..139
DNA (138bp) protein (46aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
histidinol dehydrogenase; K00013 histidinol dehydrogenase [EC:1.1.1.23]
UPI0003CFA7BA related cluster n=1 Tax=unknown RepID=UPI0003CFA7BA
SCNpilot_expt_1000_bf_scaffold_3478_2
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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154..1161
DNA (1008bp) protein (336aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X4Y4_OCHA4 rbh
alcohol dehydrogenase rbh
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ABS16288.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_3478_3
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1170..1940
DNA (771bp) protein (257aa)
UPI0003CFAC3A related cluster n=1 Tax=unknown RepID=UPI0003CFAC3A rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ19210.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
histidine utilization repressor; K05836 GntR family transcriptional regulator, histidine utilization repressor rbh
SCNpilot_expt_1000_bf_scaffold_3478_4
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1937..2887
DNA (951bp) protein (317aa)
UPI0003CE0645 related cluster n=1 Tax=unknown RepID=UPI0003CE0645
Uncharacterized protein {ECO:0000313|EMBL:ESY81321.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3478_5
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2839..3204
DNA (366bp) protein (122aa)
UPI0003CEE536 related cluster n=1 Tax=unknown RepID=UPI0003CEE536
Uncharacterized protein {ECO:0000313|EMBL:ESY69127.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3478_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3327..4277
DNA (951bp) protein (317aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
phosphoribosylaminoimidazolesuccinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] rbh
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NG51_RHILT rbh
SCNpilot_expt_1000_bf_scaffold_3478_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4496..5098
DNA (603bp) protein (201aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF122 RepID=J2RBL5_9RHIZ
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EUC01133.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
TetR family transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_3478_8
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5318..6514
DNA (1197bp) protein (399aa)
RND multidrug efflux membrane permease n=2 Tax=Rhizobium RepID=U4QAG2_9RHIZ
RND multidrug efflux membrane permease
RND multidrug efflux membrane permease {ECO:0000313|EMBL:CDI09521.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_3478_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6568..9666
DNA (3099bp) protein (1033aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family transporter n=1 Tax=Rhizobium sp. CF080 RepID=J3BQK5_9RHIZ rbh
Multidrug efflux system protein AcrB {ECO:0000313|EMBL:CDN50076.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family rbh
SCNpilot_expt_1000_bf_scaffold_3478_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9807..10985
DNA (1179bp) protein (393aa)
nodulation protein NodT n=1 Tax=Rhizobium leguminosarum RepID=UPI00036BDF95
Nodulation protein NodT {ECO:0000313|EMBL:AJC80879.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
nodT; nodulation protein (outer membrane efflux protein)
SCNpilot_expt_1000_bf_scaffold_3478_11
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10940..11188
DNA (249bp) protein (83aa)
hypothetical protein, partial n=1 Tax=Rhizobium mongolense RepID=UPI0003B57CD0
NodT family RND efflux system outer membrane lipoprotein
Nodulation protein NodT 1 {ECO:0000313|EMBL:AJD42164.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_expt_1000_bf_scaffold_3478_12
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11321..11560
DNA (240bp) protein (80aa)
UPI0003CDDB49 related cluster n=1 Tax=unknown RepID=UPI0003CDDB49
Uncharacterized protein {ECO:0000313|EMBL:ESY81774.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3478_13
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11617..12225)
DNA (609bp) protein (203aa)
Putative oligopeptide ABC transporter (ATP binding protein) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YNI5_BRASO
AppF protein {ECO:0000313|EMBL:BAQ48463.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3478_14
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13345..14205)
DNA (861bp) protein (287aa)
ABC transporter n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1I4_AGRVS rbh
ABC transporter; K02034 peptide/nickel transport system permease protein rbh
ABC transporter {ECO:0000313|EMBL:ACM38732.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_3478_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14202..15158)
DNA (957bp) protein (319aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. AP16 RepID=J2D9D0_9RHIZ rbh
Peptide ABC transporter {ECO:0000313|EMBL:KAJ36805.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
dipeptide ABC transporter; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3478_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15196..16707)
DNA (1512bp) protein (504aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium radiobacter RepID=UPI0003734AB6 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EPR07892.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
oligopeptide ABC transporter substrate binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3478_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16810..17826)
DNA (1017bp) protein (339aa)
peptidase T4 n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037B6166 rbh
Strain MEJ076 contig_51, whole genome shotgun sequence {ECO:0000313|EMBL:KIP98032.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
peptidase
SCNpilot_expt_1000_bf_scaffold_3478_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18032..19192)
DNA (1161bp) protein (387aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994, ECO:0000313|EMBL:CDN56492.1}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] rbh
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Rhizobium sp. CF080 RepID=J3BZ36_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_3478_19
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19189..20220)
DNA (1032bp) protein (344aa)
glmS2; glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Putative phosphosugar isomerase n=1 Tax=Rhizobium sp. CF080 RepID=J2IY30_9RHIZ rbh
Aminotransferase {ECO:0000313|EMBL:KGD98235.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Displaying 19 items

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