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SCNpilot_expt_1000_bf_scaffold_3605

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3605_1
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..825)
DNA (825bp) protein (275aa)
Plasmid partitioning protein RepA n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R2V2_9RHOB
RepA partitioning protein/ATPase, ParA type
RepA partitioning protein/ATPase, ParA type {ECO:0000313|EMBL:AEV36528.1}; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
SCNpilot_expt_1000_bf_scaffold_3605_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1025..1711
DNA (687bp) protein (229aa)
Phosphoribosyltransferase n=2 Tax=Rhizobium meliloti RepID=F6E8W4_SINMK rbh
Adenine/guanine phosphoribosyltransferase-related PRPP-binding protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEH83642.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_3605_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2273..3007
DNA (735bp) protein (245aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CRL3_RHILT
diguanylate cyclase
GGDEF domain-containing protein {ECO:0000313|EMBL:AJC77761.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_expt_1000_bf_scaffold_3605_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3101..3472
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X779_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL51735.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_3605_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3469..3981
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=K0PPS5_RHIML
hypothetical protein
Conserved hypothetical membrane-anchored protein {ECO:0000313|EMBL:CAC49107.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_3605_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3985..5409)
DNA (1425bp) protein (475aa)
Cro/Cl family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00037AF01E rbh
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AHK45943.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
XRE family transcriptional regulator; K07110
SCNpilot_expt_1000_bf_scaffold_3605_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5859..6698)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V788_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ENN89690.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_3605_8
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6778..7086
DNA (309bp) protein (103aa)
PCCB; propionyl-CoA carboxylase subunit beta (EC:6.4.1.3)
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4ILF8_RHIML
Propionyl-CoA carboxylase {ECO:0000313|EMBL:EHK76664.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_3605_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7137..7511
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 IPR1_9RHIZ">RepID=J2IPR1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN56417.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3605_10
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7516..7890
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QYZ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF60807.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3605_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7895..8284
DNA (390bp) protein (130aa)
pccA; propionyl-CoA carboxylase subunit alpha; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
Propionyl-CoA carboxylase alpha chain n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AEX2_RHIFH
Propionyl-CoA carboxylase alpha chain protein {ECO:0000313|EMBL:AHK45946.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_3605_12
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8314..9855
DNA (1542bp) protein (514aa)
Propionyl-CoA carboxylase alpha chain, mitochondrial {ECO:0000313|EMBL:CCF21659.1}; EC=6.4.1.3 {ECO:0000313|EMBL:CCF21659.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
carbamoyl-phosphate synthase L chain ATP-binding; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
Propionyl-CoA carboxylase alpha chain, mitochondrial n=1 Tax=Rhizobium sp. RepID=L0NLA3_RHISP
SCNpilot_expt_1000_bf_scaffold_3605_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10083..12296
DNA (2214bp) protein (738aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K01847 methylmalonyl-CoA mutase [EC:5.4.99.2]
Methylmalonyl-CoA mutase n=1 Tax=Rhizobium sp. RepID=L0NMX0_RHISP
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:KGD97005.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_3605_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12613..14559
DNA (1947bp) protein (649aa)
4-hydroxyphenylpyruvate dioxygenase protein {ECO:0000313|EMBL:AJC83857.1}; EC=1.13.11.27 {ECO:0000313|EMBL:AJC83857.1};; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
putative 4-hydroxyphenylpyruvate dioxygenase protein (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036FB0FE
SCNpilot_expt_1000_bf_scaffold_3605_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14556..15197
DNA (642bp) protein (214aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVX6_RHITR
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGB74861.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3605_16
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15422..16294
DNA (873bp) protein (291aa)
Shikimate 5-dehydrogenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UEM9_9RHIZ rbh
Shikimate 5-dehydrogenase {ECO:0000313|EMBL:ENN88618.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
shikimate dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_3605_17
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16396..17448
DNA (1053bp) protein (351aa)
Secreted sugar-binding protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FK54_PELBH
Secreted sugar-binding protein {ECO:0000313|EMBL:EAU44551.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
monosaccharide ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3605_18
unknown

Not on your lists

comp(17529..17816)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3605_19
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19000..19956
DNA (957bp) protein (319aa)
ribose ABC transporter permease n=1 Tax=Rhodococcus opacus RepID=UPI00029CD4C5
Putative ABC transporter permease protein yphD {ECO:0000313|EMBL:AHK34258.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
branched-chain amino acid transporter permease
SCNpilot_expt_1000_bf_scaffold_3605_20
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19953..20927
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Rhodococcus sp. 29MFTsu3.1 RepID=UPI0003788797
Ribose transport system permease protein rbsC {ECO:0000313|EMBL:AHK34257.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
monosaccharide ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_3605_21
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20938..21876
DNA (939bp) protein (313aa)
Putative cyclase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T9H8_9BRAD
Cyclase {ECO:0000313|EMBL:KJB94517.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
cyclase
SCNpilot_expt_1000_bf_scaffold_3605_22
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21877..22800)
DNA (924bp) protein (308aa)
HTH-type transcriptional regulator pcaQ Pca operon transcriptional activator n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AET8_RHIFH
pcaQ; HTH-type transcriptional regulator pcaQ Pca operon transcriptional activator; K02623 LysR family transcriptional regulator, pca operon transcriptional activator
LysR family transcriptional regulator PcaQ {ECO:0000313|EMBL:CCE99570.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_3605_23
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22888..23676
DNA (789bp) protein (263aa)
3-oxoadipate enol-lactonase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000372870C
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:EPE94492.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
3-oxoadipate enol-lactonase
SCNpilot_expt_1000_bf_scaffold_3605_24
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23678..24085
DNA (408bp) protein (136aa)
4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ABG63442.1}; EC=4.1.1.44 {ECO:0000313|EMBL:ABG63442.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
4-carboxymuconolactone decarboxylase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GN3_MESSB
SCNpilot_expt_1000_bf_scaffold_3605_25
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24085..24825
DNA (741bp) protein (247aa)
pcaH; protocatechuate 3,4-dioxygenase beta subunit; K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase beta subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2N1_AGRVS
Protocatechuate 3,4-dioxygenase beta subunit {ECO:0000313|EMBL:ACM39129.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_3605_26
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24827..25450
DNA (624bp) protein (208aa)
pcaG; protocatechuate 3,4-dioxygenase alpha subunit; K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase alpha chain n=1 Tax=Rhizobium sp. RepID=L0NK36_RHISP rbh
Protocatechuate 3,4-dioxygenase {ECO:0000313|EMBL:KGE02117.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_3605_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25473..26537
DNA (1065bp) protein (355aa)
3-carboxy-cis,cis-muconate cycloisomerase PcaB {ECO:0000313|EMBL:EYR83631.1}; EC=5.5.1.2 {ECO:0000313|EMBL:EYR83631.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pcaB; 3-carboxy-cis,cis-muconate cycloisomerase; K01857 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
3-carboxy-cis,cis-muconate cycloisomerase PcaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWR8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3605_28
unknown

Not on your lists

comp(26553..26624)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 28 items

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