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SCNpilot_expt_1000_bf_scaffold_3630

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3630_1
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51..986)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036065E1
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EHS49624.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3630_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1097..1633
DNA (537bp) protein (179aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6BA66_RHILS
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACS60807.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_3630_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1691..2128
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036D6CC3
Uncharacterized protein {ECO:0000313|EMBL:EJB04124.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3630_4
unknown

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comp(2150..2329)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3630_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2521..3504)
DNA (984bp) protein (328aa)
sugar ABC transporter permease n=1 Tax=Rhizobium meliloti RepID=UPI0003775CA9 rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP71225.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC transporter permease; K10440 ribose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3630_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3517..4266)
DNA (750bp) protein (250aa)
Sugar uptake ABC transporter permease protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JPX0_AGRRK rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP71226.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
sugar ABC transporter permease; K10440 ribose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_3630_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4266..4487)
DNA (222bp) protein (74aa)
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IQN2_RHIML
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP71226.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component
SCNpilot_expt_1000_bf_scaffold_3630_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4484..5992)
DNA (1509bp) protein (503aa)
ABC transporter-like protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] rbh
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI00037E1C56 rbh
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDP71227.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_3630_9
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6112..7092)
DNA (981bp) protein (327aa)
Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Rhizobium meliloti RepID=F6C458_SINMB rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP71228.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Putative galactose ABC transporter,periplasmic solute-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3630_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7268..8338
DNA (1071bp) protein (357aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium meliloti RepID=UPI0002DB76DD rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KDP71229.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative transcriptional regulator, LacI family protein; K02529 LacI family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_3630_11
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8659..9450
DNA (792bp) protein (264aa)
Regulatory protein, AttJ n=1 Tax=uncultured bacterium RepID=K2A0X6_9BACT
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AKI03443.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3630_12
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9466..10335)
DNA (870bp) protein (290aa)
Alpha/beta family hydrolase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LMG0_HALO1
alpha/beta family hydrolase
Alpha/beta family hydrolase {ECO:0000313|EMBL:ACY16866.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
SCNpilot_expt_1000_bf_scaffold_3630_13
unknown

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comp(10360..10461)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3630_14
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10481..11332)
DNA (852bp) protein (284aa)
Regulatory protein, AttJ n=1 Tax=uncultured bacterium RepID=K2A0X6_9BACT rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AKI03443.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3630_15

Not on your lists

11511..11900
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BI40_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD61699.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3630_16

Not on your lists

11938..12735
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AZ68_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD61698.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_3630_17
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12732..13667
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AB-629-F11 RepID=UPI00037C681E rbh
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:AKI03440.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
beta-lactamase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3630_18
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13710..14876
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AZ73_9BACT rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:AKI03439.1}; Flags: Precursor;; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
putative sugar ABC transporter, periplasmic binding protein
SCNpilot_expt_1000_bf_scaffold_3630_19
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14959..16782
DNA (1824bp) protein (608aa)
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:AKI03438.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AKI03438.1};; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AB-629-F11 RepID=UPI0003653EC0 rbh
ribose ABC transporter, ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_3630_20
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16779..18161
DNA (1383bp) protein (461aa)
Ribose ABC transporter, permease protein (Modular protein) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1G8_9RHIZ
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:AKI03437.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
rbsCb1; ribose ABC transporter, permease rbh
SCNpilot_expt_1000_bf_scaffold_3630_21
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18161..19087
DNA (927bp) protein (309aa)
Inner-membrane translocator (Modular protein) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F149_9RHIZ
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:AKI03436.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
rbsC1; inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_3630_22
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19180..19464
DNA (285bp) protein (95aa)
Inner-membrane translocator (Modular protein) n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F149_9RHIZ
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporters {ECO:0000313|EMBL:AKI03436.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
rbsC1; inner-membrane translocator
Displaying 22 items

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