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SCNpilot_expt_1000_bf_scaffold_3977

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3977_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..272
DNA (270bp) protein (90aa)
Transcriptional regulator AraC type, putative DNA gyrase inhibitor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V7P3_9RHIZ
Transcriptional regulator AraC type, putative DNA gyrase inhibitor {ECO:0000313|EMBL:ENN89196.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator, AraC family
SCNpilot_expt_1000_bf_scaffold_3977_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(319..945)
DNA (627bp) protein (209aa)
Glutathione S-transferase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V5S4_9RHIZ rbh
Glutathione S-transferase protein {ECO:0000313|EMBL:ENN89195.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
glutathione S-transferase protein rbh
SCNpilot_expt_1000_bf_scaffold_3977_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1066..2286)
DNA (1221bp) protein (407aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKX7_RHITR rbh
isocitrate dehydrogenase, NADP-dependent rbh
SCNpilot_expt_1000_bf_scaffold_3977_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2512..3051
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMR5_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB71365.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3977_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3161..5062
DNA (1902bp) protein (634aa)
Putative transmembrane protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MG06_RHIL3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EUB95945.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_3977_6
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5212..5940
DNA (729bp) protein (243aa)
lasT; tRNA/rRNA methyltransferase; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
tRNA/rRNA methyltransferase n=2 Tax=Agrobacterium RepID=Q7CYC5_AGRT5
SCNpilot_expt_1000_bf_scaffold_3977_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5912..6721
DNA (810bp) protein (270aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
murI; glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] rbh
Glutamate racemase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8S7_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_3977_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6801..7088)
DNA (288bp) protein (96aa)
OmpA/MotB domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUQ9_9RHIZ
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:EYR82376.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3977_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7445..8008)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2LAA6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ29989.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_3977_10
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8010..8864)
DNA (855bp) protein (285aa)
sseA; 3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] rbh
Thiosulfate sulfurtransferase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VUN9_9RHIZ rbh
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_3977_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8882..9619)
DNA (738bp) protein (246aa)
Putative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain-containing protein n=1 Tax=Rhizobium sp. CF122 RepID=J2IFL0_9RHIZ rbh
Putative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain-containing protein {ECO:0000313|EMBL:EJL54800.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
alaS1; alanyl-tRNA synthetase; K07050 rbh
SCNpilot_expt_1000_bf_scaffold_3977_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9628..10665)
DNA (1038bp) protein (346aa)
cysteine synthase A; K01738 cysteine synthase A [EC:2.5.1.47] rbh
cysteine synthase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A5248 rbh
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:ACI54732.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_3977_13
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10901..11191)
DNA (291bp) protein (97aa)
CopG family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000382474F
Transcriptional regulator {ECO:0000313|EMBL:EJT05829.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_3977_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11256..12515)
DNA (1260bp) protein (420aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Rhizobium giardinii RepID=UPI00037869DD rbh
Methyltransferase, cyclopropane fatty acid synthase {ECO:0000313|EMBL:EJB03062.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_3977_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12946..14391)
DNA (1446bp) protein (482aa)
DNA photolyase; K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] rbh
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KJX88778.1}; EC=4.1.99.3 {ECO:0000313|EMBL:KJX88778.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
DNA photolyase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CJC9_AGRT5 rbh
SCNpilot_expt_1000_bf_scaffold_3977_16
unknown

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comp(14585..14740)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3977_17
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14898..15077)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IA79_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE96168.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3977_18
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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15684..16244
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08QU6_STIAD
Uncharacterized protein {ECO:0000313|EMBL:EAU62856.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3977_19
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16216..16860)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UEY5_SINMW
hypothetical protein; K07220 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR62215.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_3977_20
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17008..18654
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Rhizobium radiobacter RepID=K7XK37_RHIRD
Na+/Pi-cotransporter protein {ECO:0000313|EMBL:AJD41995.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
sodium-dependent inorganic phosphate (Pi) transporter; K03324 phosphate:Na+ symporter
SCNpilot_expt_1000_bf_scaffold_3977_21
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18679..19326)
DNA (648bp) protein (216aa)
Probable two-component response regulator protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2JYB7_RHIEC
two-component response regulator protein; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
Probable two-component response regulator protein {ECO:0000313|EMBL:ABC94419.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_3977_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19498..20247
DNA (750bp) protein (250aa)
Putative FNR/CRP family transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M8J6_RHIL3
FNR/CRP family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Putative FNR/CRP family transcriptional regulator {ECO:0000313|EMBL:CAK03735.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_3977_23
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20192..22192
DNA (2001bp) protein (667aa)
histidine kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003725766 rbh
Putative sensor histidine kinase with a response regulator receiver domain {ECO:0000313|EMBL:CDN50286.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
fixL; two-component sensor histidine kinase
Displaying 23 items

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