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SCNpilot_expt_1000_bf_scaffold_5253

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5253_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(123..1247)
DNA (1125bp) protein (375aa)
Putative mandelate racemase/muconate lactonizing enzyme n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V705_9RHIZ rbh
Putative mandelate racemase/muconate lactonizing enzyme {ECO:0000313|EMBL:ENN89570.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
mandelate racemase/muconate lactonizing enzyme rbh
SCNpilot_expt_1000_bf_scaffold_5253_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1359..2507)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037EB7CC rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KEA03871.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
iron alcohol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_5253_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2613..3515
DNA (903bp) protein (301aa)
Transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UH85_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KGD87560.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
transcriptional regulator, LysR family
SCNpilot_expt_1000_bf_scaffold_5253_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3569..5266)
DNA (1698bp) protein (566aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FYX3_RHIML rbh
Chemotaxis protein {ECO:0000313|EMBL:KDP71328.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
mcpY; chemoreceptor (methyl-accepting chemotaxis protein); K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_5253_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5544..6014)
DNA (471bp) protein (157aa)
Chemotaxis signal transduction protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PQ51_RHIE6
cheW5; chemotaxis signal transduction protein; K03408 purine-binding chemotaxis protein CheW
Chemotaxis signal transduction protein {ECO:0000313|EMBL:KEC71620.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SCNpilot_expt_1000_bf_scaffold_5253_6
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6221..7156)
DNA (936bp) protein (312aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
arcB; arginase (EC:3.5.3.1) rbh
Arginase n=1 Tax=Rhizobium sp. AP16 RepID=J2DCJ6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5253_7
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7296..7724
DNA (429bp) protein (143aa)
Transcriptional regulator protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HB09_9RHIZ
Transcriptional regulator protein {ECO:0000313|EMBL:EPE95769.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_5253_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7783..8190)
DNA (408bp) protein (136aa)
atpC; ATP synthase subunit epsilon (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Rhizobium sp. CF080 RepID=J3BEF3_9RHIZ
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_5253_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8270..8530)
DNA (261bp) protein (87aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
atpD; ATP synthase F1 subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta n=17 Tax=Rhizobiaceae RepID=V5ENA6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5253_10
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8544..9230
DNA (687bp) protein (229aa)
ATP synthase beta subunit (Fragment) n=1 Tax=Bradyrhizobium japonicum RepID=F5A9I2_BRAJP
ATP synthase beta subunit {ECO:0000313|EMBL:AEC12027.1}; Flags: Fragment;; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
AGAP012078-PA; K02835 peptide chain release factor 1
Displaying 10 items

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