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SCNpilot_expt_1000_bf_scaffold_5442

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5442_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..263
DNA (261bp) protein (87aa)
50S ribosomal protein L24 n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=RL24_RHILW
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_5442_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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256..813
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PXC7_9RHIZ rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
SCNpilot_expt_1000_bf_scaffold_5442_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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846..1151
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A4U3_RHIFH
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_5442_4
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1164..1529
DNA (366bp) protein (122aa)
30S ribosomal protein S8 n=1 Tax=Rhizobium giardinii RepID=UPI000362512A
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_expt_1000_bf_scaffold_5442_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1574..2107
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=J0GZV3_RHILT
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_5442_6
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2120..2482
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00038115FF
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SCNpilot_expt_1000_bf_scaffold_5442_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2627..3196
DNA (570bp) protein (190aa)
30S ribosomal protein S5 n=1 Tax=Rhizobium sp. CF080 RepID=J2IE34_9RHIZ rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
SCNpilot_expt_1000_bf_scaffold_5442_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3211..3411
DNA (201bp) protein (67aa)
50S ribosomal protein L30 n=1 Tax=Rhizobium radiobacter RepID=UPI00035EEE30
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_5442_9
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3425..3895
DNA (471bp) protein (157aa)
50S ribosomal protein L15 n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X7W3_RHIFR
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
rplO; 50S ribosomal protein L15
SCNpilot_expt_1000_bf_scaffold_5442_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4130..5470
DNA (1341bp) protein (447aa)
Protein translocase subunit SecY n=2 Tax=Rhizobium etli RepID=Q2K9J6_RHIEC rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
SCNpilot_expt_1000_bf_scaffold_5442_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6542..6685
DNA (144bp) protein (48aa)
30S ribosomal protein S13 n=1 Tax=Rhizobium sp. (strain NGR234) RepID=RS13_RHISN
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
SCNpilot_expt_1000_bf_scaffold_5442_12
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6822..7211
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=2 Tax=Rhizobium RepID=J2IE40_9RHIZ
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
30S ribosomal protein S11
SCNpilot_expt_1000_bf_scaffold_5442_13
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7315..8325
DNA (1011bp) protein (337aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
rpoA; DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2P8U1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5442_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8370..8795
DNA (426bp) protein (142aa)
50S ribosomal protein L17 n=1 Tax=Rhizobium sp. (strain NGR234) RepID=RL17_RHISN
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_5442_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8869..9516)
DNA (648bp) protein (216aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CHI6_RHILT rbh
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
sulfite oxidase subunit YedZ rbh
SCNpilot_expt_1000_bf_scaffold_5442_16
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9516..10466)
DNA (951bp) protein (317aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
sulfoxide reductase catalytic subunit YedY n=1 Tax=Rhizobium leguminosarum RepID=UPI00036AAECC rbh
yedY; sulfite reductase catalytic subunit YedY rbh
SCNpilot_expt_1000_bf_scaffold_5442_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10776..12689
DNA (1914bp) protein (638aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ilvD2; dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7D7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5442_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12770..13120)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003723377
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ABC90500.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_5442_19
unknown

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comp(13136..13333)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5442_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13407..14810
DNA (1404bp) protein (468aa)
protease Do; K01362 [EC:3.4.21.-] rbh
serine protease n=1 Tax=Rhizobium leguminosarum RepID=UPI000370317C rbh
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:EJC73009.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_5442_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14914..15717
DNA (804bp) protein (268aa)
AAA ATPase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAM8_AZOC5
recombination factor protein RarA; K07478 putative ATPase
AAA ATPase {ECO:0000313|EMBL:BAF88525.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Displaying 21 items

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