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SCNpilot_expt_1000_bf_scaffold_5678

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5678_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..344
DNA (342bp) protein (114aa)
group 1 glycosyl transferase; K12995 rhamnosyltransferase [EC:2.4.1.-]
Glycosyltransferase n=1 Tax=Rhizobium sp. AP16 RepID=J2L8E6_9RHIZ
Glycosyltransferase {ECO:0000313|EMBL:EJK83681.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_5678_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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341..823
DNA (483bp) protein (161aa)
UDP-glucose 4-epimerase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TUS4_9RHIZ
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ENN84214.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nucleotide sugar epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_5678_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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820..1245
DNA (426bp) protein (142aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pseudomonas stutzeri NF13 RepID=M2V424_PSEST
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EME00562.1}; TaxID=1212548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri NF13.;"
nucleotide sugar epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_5678_4
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1356..2345)
DNA (990bp) protein (330aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FA17_9RHIZ
Succinylglutamate desuccinylase/aspartoacylase {ECO:0000313|EMBL:EHS50332.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
succinylglutamate desuccinylase/aspartoacylase; K06987
SCNpilot_expt_1000_bf_scaffold_5678_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2422..3048)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A650_RHIFH rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE98360.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_5678_6
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3045..3311)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IQW5_RHIML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAC48663.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_5678_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3803..5899
DNA (2097bp) protein (699aa)
Penicillin-binding protein, 1A family n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MC07_RHISN
Penicillin-binding protein {ECO:0000313|EMBL:KDP70819.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
penicillin-binding protein, 1A family
SCNpilot_expt_1000_bf_scaffold_5678_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6176..8089
DNA (1914bp) protein (638aa)
Chaperone protein DnaK n=1 Tax=Rhizobium sp. Pop5 RepID=K0VSY7_9RHIZ
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK
SCNpilot_expt_1000_bf_scaffold_5678_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8148..9302
DNA (1155bp) protein (385aa)
Chaperone protein DnaJ n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A239_RHIRD
dnaJ; chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_5678_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9572..10084
DNA (513bp) protein (171aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2KL80_9RHIZ
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EUC01170.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_5678_11
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10097..10771)
DNA (675bp) protein (225aa)
Polar amino acid ABC transporter permease n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H6Z3_9RHIZ
Polar amino acid ABC transporter permease {ECO:0000313|EMBL:EPE94040.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_5678_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10967..11764)
DNA (798bp) protein (266aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Rhizobium sp. CF080 RepID=J3CLA4_9RHIZ rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD87348.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
family 3 extracellular solute-binding protein
Displaying 12 items

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