name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_4433_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..1130
|
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Sensor protein QseC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX6_9RHIZ
rbh
sensor histidine kinase
|
|
SCNpilot_expt_1000_bf_scaffold_4433_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1175..2440
|
Membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGW3_9RHIZ
rbh
Membrane protein {ECO:0000313|EMBL:EYR79388.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4433_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2599..2838)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXV0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79389.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09794 hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2874..3275)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1A3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79390.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3378..3548
|
Uncharacterized protein {ECO:0000313|EMBL:CDN92199.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4433_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3592..5523)
|
Putative cadmium-transporting ATPase CadA {ECO:0000313|EMBL:EYR79391.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EYR79391.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative cadmium-transporting ATPase CadA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5U1_9RHIZ
rbh
heavy metal translocating P-type ATPase
|
|
SCNpilot_expt_1000_bf_scaffold_4433_7
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5526..6221)
|
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX9_9RHIZ
rbh
Membrane protein {ECO:0000313|EMBL:KGE80666.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6528..6845)
|
Peptidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGW5_9RHIZ
Peptidase {ECO:0000313|EMBL:EYR79393.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_9
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6985..7710)
|
lipoprotein-releasing system ATP-binding protein LolD (EC:3.6.3.-); K02003 putative ABC transport system ATP-binding protein
rbh
Lipoprotein-releasing system ATP-binding protein LolD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXV3_9RHIZ
rbh
ABC transporter {ECO:0000313|EMBL:KGE80668.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
|
|
SCNpilot_expt_1000_bf_scaffold_4433_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7703..8905)
|
Putative permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1A8_9RHIZ
rbh
Putative permease {ECO:0000313|EMBL:EYR79395.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
permease; K02004 putative ABC transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8902..10095)
|
HlyD family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5U5_9RHIZ
rbh
HlyD family protein {ECO:0000313|EMBL:EYR79396.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RND family efflux transporter MFP subunit
|
|
SCNpilot_expt_1000_bf_scaffold_4433_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10214..10633)
|
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWY2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR79397.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_4433_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10864..11514)
|
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX1_9RHIZ
Nodulation protein NolG {ECO:0000313|EMBL:EYR79398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acriflavin resistance protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11460..12719)
|
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX1_9RHIZ
Nodulation protein NolG {ECO:0000313|EMBL:EYR79398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acriflavin resistance protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_15
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria
|
Not on your lists |
12736..14046
|
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
|
|
SCNpilot_expt_1000_bf_scaffold_4433_16
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14016..15029)
|
Membrane fusion protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZW8_9RHIZ
membrane fusion protein
Membrane fusion protein {ECO:0000313|EMBL:AGK56744.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
|
|
SCNpilot_expt_1000_bf_scaffold_4433_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15095..15298)
|
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNW7_9RHOB
Sulfurtransferase {ECO:0000313|EMBL:KGD96968.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_18
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15335..16627)
|
Sulfide-quinone oxidoreductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FZ7_MESSB
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGD96967.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfide-quinone reductase
|
|
SCNpilot_expt_1000_bf_scaffold_4433_19
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16752..17060
|
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B436C
ArsR family transcriptional regulator {ECO:0000313|EMBL:EZQ13527.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
regulatory protein ArsR
|
|
SCNpilot_expt_1000_bf_scaffold_4433_20
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17092..17481
|
ArsR-family transcriptional regulator n=5 Tax=Proteus mirabilis RepID=S5UT02_PROMI
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:AEQ50957.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4433_21
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17809..18726)
|
Mg2+ transport ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2]
UPI0003CFCDBD related cluster n=1 Tax=unknown RepID=UPI0003CFCDBD
Magnesium transporter {ECO:0000313|EMBL:ESZ68754.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
|
|
SCNpilot_expt_1000_bf_scaffold_4433_22
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19399..19614
|
Tax=RBG_16_Alphaproteobacteria_64_48_curated
|
|
SCNpilot_expt_1000_bf_scaffold_4433_23
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19849..20358)
|
Mg2+ transport ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2]
Mg2+ transport ATPase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q988T1_RHILO
Mg2+ transport ATPase {ECO:0000313|EMBL:BAB52866.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4433_24
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20392..21192)
|
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C37C4
Universal stress family protein {ECO:0000313|EMBL:AID30420.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
uspa domain-containing protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21341..21919
|
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=M4MG91_RHIML
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK65298.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4433_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21935..22303)
|
beta-lactamase-like protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B1FE
Beta-lactamase-like protein {ECO:0000313|EMBL:EYR82617.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
beta-lactamase domain-containing protein; K07576 metallo-beta-lactamase family protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22270..22971)
|
beta-Casp domain-containing protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D911C4
Beta-lactamase-like protein {ECO:0000313|EMBL:EYR82617.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
beta-lactamase-like protein; K07576 metallo-beta-lactamase family protein
|
|
SCNpilot_expt_1000_bf_scaffold_4433_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23296..25176)
|
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative phosphoketolase; K01621 phosphoketolase [EC:4.1.2.9]
Putative phosphoketolase Xfp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQC0_9RHIZ
|