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SCNpilot_expt_1000_bf_scaffold_4433

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4433_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1130
DNA (1128bp) protein (376aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Sensor protein QseC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX6_9RHIZ rbh
sensor histidine kinase
SCNpilot_expt_1000_bf_scaffold_4433_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1175..2440
DNA (1266bp) protein (422aa)
Membrane protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGW3_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:EYR79388.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_4433_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2599..2838)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXV0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79389.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09794 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4433_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2874..3275)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1A3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79390.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4433_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3378..3548
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:CDN92199.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_4433_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3592..5523)
DNA (1932bp) protein (644aa)
Putative cadmium-transporting ATPase CadA {ECO:0000313|EMBL:EYR79391.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EYR79391.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative cadmium-transporting ATPase CadA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5U1_9RHIZ rbh
heavy metal translocating P-type ATPase
SCNpilot_expt_1000_bf_scaffold_4433_7
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5526..6221)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX9_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:KGE80666.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4433_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6528..6845)
DNA (318bp) protein (106aa)
Peptidase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGW5_9RHIZ
Peptidase {ECO:0000313|EMBL:EYR79393.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4433_9
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6985..7710)
DNA (726bp) protein (242aa)
lipoprotein-releasing system ATP-binding protein LolD (EC:3.6.3.-); K02003 putative ABC transport system ATP-binding protein rbh
Lipoprotein-releasing system ATP-binding protein LolD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXV3_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:KGE80668.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_4433_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7703..8905)
DNA (1203bp) protein (401aa)
Putative permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1A8_9RHIZ rbh
Putative permease {ECO:0000313|EMBL:EYR79395.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
permease; K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4433_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8902..10095)
DNA (1194bp) protein (398aa)
HlyD family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5U5_9RHIZ rbh
HlyD family protein {ECO:0000313|EMBL:EYR79396.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_4433_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10214..10633)
DNA (420bp) protein (140aa)
Transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWY2_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EYR79397.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4433_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10864..11514)
DNA (651bp) protein (217aa)
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX1_9RHIZ
Nodulation protein NolG {ECO:0000313|EMBL:EYR79398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_4433_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11460..12719)
DNA (1260bp) protein (420aa)
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX1_9RHIZ
Nodulation protein NolG {ECO:0000313|EMBL:EYR79398.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_4433_15
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

Not on your lists

12736..14046
DNA (1311bp) protein (437aa)
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
SCNpilot_expt_1000_bf_scaffold_4433_16
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14016..15029)
DNA (1014bp) protein (338aa)
Membrane fusion protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZW8_9RHIZ
membrane fusion protein
Membrane fusion protein {ECO:0000313|EMBL:AGK56744.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_4433_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15095..15298)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNW7_9RHOB
Sulfurtransferase {ECO:0000313|EMBL:KGD96968.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4433_18
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15335..16627)
DNA (1293bp) protein (431aa)
Sulfide-quinone oxidoreductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FZ7_MESSB
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGD96967.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfide-quinone reductase
SCNpilot_expt_1000_bf_scaffold_4433_19
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16752..17060
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B436C
ArsR family transcriptional regulator {ECO:0000313|EMBL:EZQ13527.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
regulatory protein ArsR
SCNpilot_expt_1000_bf_scaffold_4433_20
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17092..17481
DNA (390bp) protein (130aa)
ArsR-family transcriptional regulator n=5 Tax=Proteus mirabilis RepID=S5UT02_PROMI
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:AEQ50957.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_4433_21
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17809..18726)
DNA (918bp) protein (306aa)
Mg2+ transport ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2]
UPI0003CFCDBD related cluster n=1 Tax=unknown RepID=UPI0003CFCDBD
Magnesium transporter {ECO:0000313|EMBL:ESZ68754.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
SCNpilot_expt_1000_bf_scaffold_4433_22
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19399..19614
DNA (216bp) protein (72aa)
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_4433_23
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19849..20358)
DNA (510bp) protein (170aa)
Mg2+ transport ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2]
Mg2+ transport ATPase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q988T1_RHILO
Mg2+ transport ATPase {ECO:0000313|EMBL:BAB52866.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_4433_24
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20392..21192)
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C37C4
Universal stress family protein {ECO:0000313|EMBL:AID30420.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
uspa domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4433_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21341..21919
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=M4MG91_RHIML
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK65298.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_4433_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21935..22303)
DNA (369bp) protein (123aa)
beta-lactamase-like protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B1FE
Beta-lactamase-like protein {ECO:0000313|EMBL:EYR82617.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
beta-lactamase domain-containing protein; K07576 metallo-beta-lactamase family protein
SCNpilot_expt_1000_bf_scaffold_4433_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22270..22971)
DNA (702bp) protein (234aa)
beta-Casp domain-containing protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D911C4
Beta-lactamase-like protein {ECO:0000313|EMBL:EYR82617.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
beta-lactamase-like protein; K07576 metallo-beta-lactamase family protein
SCNpilot_expt_1000_bf_scaffold_4433_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23296..25176)
DNA (1881bp) protein (627aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative phosphoketolase; K01621 phosphoketolase [EC:4.1.2.9]
Putative phosphoketolase Xfp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQC0_9RHIZ
Displaying 28 items

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