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SCNpilot_expt_1000_bf_scaffold_4470

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4470_1
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..431
DNA (429bp) protein (143aa)
arsenite oxidase large subunit; K08356 arsenite oxidase large subunit [EC:1.20.9.1]
AoxB n=1 Tax=Sinorhizobium sp. M14 RepID=E9KN65_9RHIZ
Arsenite oxidase large subunit {ECO:0000313|EMBL:EKF61500.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_4470_2
Sinorhizobium sp. M14, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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428..1315
DNA (888bp) protein (296aa)
arsenite oxidase large subunit (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1]
AoxB n=1 Tax=Sinorhizobium sp. M14 RepID=E9KN65_9RHIZ
AoxB {ECO:0000313|EMBL:AFR74878.1}; Arsenite oxidase large subunit {ECO:0000313|EMBL:ADO95186.1}; TaxID=430451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium sp. M14.;"
SCNpilot_expt_1000_bf_scaffold_4470_3
unknown

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comp(1234..2079)
DNA (846bp) protein (282aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4470_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2249..2578
DNA (330bp) protein (110aa)
Cytochrome C class I n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QJY7_9RHIZ
Cytochrome C class I {ECO:0000313|EMBL:EKF61501.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
cytochrome C class I; K08738 cytochrome c
SCNpilot_expt_1000_bf_scaffold_4470_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2656..3939
DNA (1284bp) protein (428aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] rbh
Molybdenum cofactor synthesis domain-containing protein n=2 Tax=Rhizobium radiobacter RepID=H0HHF1_RHIRD rbh
Molybdenum cofactor synthesis domain-containing protein {ECO:0000313|EMBL:EHJ95434.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_expt_1000_bf_scaffold_4470_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4090..4272)
DNA (183bp) protein (61aa)
Putative plasmid stabilization protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HIK3_RHIRD
Putative plasmid stabilization protein {ECO:0000313|EMBL:EHJ95000.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
putative plasmid stabilization protein
SCNpilot_expt_1000_bf_scaffold_4470_7
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4389..4640)
DNA (252bp) protein (84aa)
Putative plasmid stabilization protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0WHX0_9RHIZ
Putative plasmid stabilization protein {ECO:0000313|EMBL:EJZ22829.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
putative plasmid stabilization protein
SCNpilot_expt_1000_bf_scaffold_4470_8
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4763..6013
DNA (1251bp) protein (417aa)
Putative multicopper oxidase n=1 Tax=Rhizobium sp. CF080 RepID=J3CGJ9_9RHIZ rbh
Multicopper oxidase type 3 {ECO:0000313|EMBL:CDN48309.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
multicopper oxidase type 3
SCNpilot_expt_1000_bf_scaffold_4470_9
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6045..6536
DNA (492bp) protein (164aa)
Copper oxidase n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JAA5_9RHIZ
Copper oxidase {ECO:0000313|EMBL:EGL65137.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
copper oxidase, possibly exported
SCNpilot_expt_1000_bf_scaffold_4470_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6533..6823
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR71_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83949.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4470_11
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6862..7230)
DNA (369bp) protein (123aa)
UPI0003D066D0 related cluster n=1 Tax=unknown RepID=UPI0003D066D0
Uncharacterized protein {ECO:0000313|EMBL:ESZ20129.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4470_12
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7356..7787)
DNA (432bp) protein (144aa)
Cytochrome c family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLZ9_9RHIZ
Cytochrome C {ECO:0000313|EMBL:KGE79740.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
cytochrome c class I
SCNpilot_expt_1000_bf_scaffold_4470_13
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7929..8363)
DNA (435bp) protein (145aa)
Cytochrome c, class I n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW31_9RHIZ
Cytochrome C {ECO:0000313|EMBL:KGE79739.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4470_14
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8360..9844)
DNA (1485bp) protein (495aa)
Multicopper oxidase type 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRG0_9RHIZ rbh
Copper oxidase {ECO:0000313|EMBL:KGE79738.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
multicopper oxidase type 2
SCNpilot_expt_1000_bf_scaffold_4470_15
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9920..11491)
DNA (1572bp) protein (524aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUP9_9RHIZ
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:KGE79736.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4470_16
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11811..12242)
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KGE79735.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_4470_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12462..12767)
DNA (306bp) protein (102aa)
Cytochrome B562 n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GWH4_9RHIZ
Putative transmembrane cytochrome b562 {ECO:0000313|EMBL:CDN95858.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cytochrome B561
SCNpilot_expt_1000_bf_scaffold_4470_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12945..14465)
DNA (1521bp) protein (507aa)
thymidine phosphorylase; K00758 thymidine phosphorylase [EC:2.4.2.4]
Putative thymidine phosphorylase {ECO:0000256|HAMAP-Rule:MF_00703}; EC=2.4.2.4 {ECO:0000256|HAMAP-Rule:MF_00703};; TdRPase {ECO:0000256|HAMAP-Rule:MF_00703}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Putative thymidine phosphorylase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=TYPH_MESSB
SCNpilot_expt_1000_bf_scaffold_4470_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14462..14692)
DNA (231bp) protein (77aa)
Beta-lactamase-like protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EK69_9SPHN
Beta-Casp domain-containing protein {ECO:0000313|EMBL:ETR79393.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
beta-lactamase-like protein; K07576 metallo-beta-lactamase family protein
SCNpilot_expt_1000_bf_scaffold_4470_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14694..16688
DNA (1995bp) protein (665aa)
cation transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI00036788F3
Cation efflux system protein (Heavy metal efflux pump), CzcA family {ECO:0000313|EMBL:KEC71362.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
resistance nodulation cell division (RND) metal efflux pump, inner membrane component
SCNpilot_expt_1000_bf_scaffold_4470_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16934..17752
DNA (819bp) protein (273aa)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nadE; NAD synthetase; K01916 NAD+ synthase [EC:6.3.1.5] rbh
NH(3)-dependent NAD(+) synthetase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V0I6_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4470_22
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18123..18332
DNA (210bp) protein (70aa)
cation-transporting ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase n=1 Tax=Deinococcus sp. 2009 RepID=UPI0003B4956B
Heavy metal transporter {ECO:0000313|EMBL:EYC50053.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
SCNpilot_expt_1000_bf_scaffold_4470_23
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18939..19121)
DNA (183bp) protein (61aa)
Putative heavy metal translocating P-type ATPase {ECO:0000313|EMBL:CDM59875.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDM59875.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Heavy metal translocating P-type ATPase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AJU9_NITEC
Displaying 23 items

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