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SCNpilot_expt_1000_bf_scaffold_4714

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4714_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29..319
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8G9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81802.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4714_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

316..600
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPA4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81803.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4714_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

603..1418
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYC4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81804.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4714_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1488..1730
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTS5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81805.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4714_5
unknown

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1727..1972
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4714_6
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2063..2875
DNA (813bp) protein (271aa)
oxidoreductase n=1 Tax=Aureimonas ureilytica RepID=UPI00037A495D
Uncharacterized protein {ECO:0000313|EMBL:CCD94630.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4714_7
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2875..3024
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q896_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDI08791.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_4714_8
Rhizobium phage 16-3, Caudovirales, Viruses

Not on your lists

3048..3665
DNA (618bp) protein (206aa)
p078 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW6_BP163 rbh
p078 {ECO:0000313|EMBL:ABF71331.1}; TaxID=10704 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Rhizobium phage 16-3 (Bacteriophage 16-3).;"
SCNpilot_expt_1000_bf_scaffold_4714_9
Rhizobium phage 16-3, Caudovirales, Viruses

Not on your lists

3722..4138
DNA (417bp) protein (139aa)
p079 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTW7_BP163
p079 {ECO:0000313|EMBL:ABF71356.1}; TaxID=10704 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Rhizobium phage 16-3 (Bacteriophage 16-3).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4714_10

Not on your lists

4138..4662
DNA (525bp) protein (175aa)
Exonuclease n=1 Tax=Environmental Halophage eHP-32 RepID=H9YSQ5_9VIRU
Exonuclease {ECO:0000313|EMBL:AFH22695.1}; TaxID=1168834 species="Viruses; unclassified phages; environmental samples.;" source="Environmental Halophage eHP-32.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4714_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4715..5776
DNA (1062bp) protein (354aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
phage DNA polymerase III, subunit beta (EC:2.7.7.7) rbh
DNA polymerase III subunit beta n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HBD0_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_4714_12
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5779..6066
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HBC9_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KEA07511.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_4714_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6039..7025
DNA (987bp) protein (329aa)
p085 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX3_BP163 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR81818.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4714_14

Not on your lists

6994..7989
DNA (996bp) protein (332aa)
DNA methylase N-4/N-6 n=2 Tax=Pseudomonas aeruginosa (strain LESB58) RepID=B7V4M1_PSEA8 rbh
DNA methylase N-4/N-6 rbh
DNA methylase {ECO:0000313|EMBL:AGH31797.1}; TaxID=754067 species="Viruses; dsDNA viruses, no RNA stage; unclassified dsDNA phages.;" source="Salicola phage CGphi29.;"
SCNpilot_expt_1000_bf_scaffold_4714_15
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8037..8528
DNA (492bp) protein (164aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZU4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEA07509.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_4714_16
Rhizobium phage 16-3, Caudovirales, Viruses

Not on your lists

8528..9169
DNA (642bp) protein (214aa)
p088 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX6_BP163 rbh
p088 {ECO:0000313|EMBL:ABF71360.1}; TaxID=10704 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Rhizobium phage 16-3 (Bacteriophage 16-3).;"
helicase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4714_17
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9061..9951)
DNA (891bp) protein (297aa)
IstB domain protein ATP-binding protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F6P5_9RHIZ rbh
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:EHS51569.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
putative IS21 family transposase, OrfB rbh
SCNpilot_expt_1000_bf_scaffold_4714_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9941..11461)
DNA (1521bp) protein (507aa)
Integrase, catalytic region n=2 Tax=Rhizobium RepID=N6U3F9_9RHIZ rbh
ISPsy20, transposase IstA {ECO:0000313|EMBL:CDN51568.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
putative IS21 family transposase, OrfA rbh
Displaying 18 items

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