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SCNpilot_expt_1000_bf_scaffold_6019

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6019_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..175
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q7J0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE00474.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6019_2
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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206..757
DNA (552bp) protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB79854.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_1000_bf_scaffold_6019_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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898..1233
DNA (336bp) protein (112aa)
Glutaredoxin n=2 Tax=Rhizobium RepID=J3BSV1_9RHIZ
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
putative glutaredoxin protein
SCNpilot_expt_1000_bf_scaffold_6019_4
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1345..2571
DNA (1227bp) protein (409aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAT6_9RHIZ rbh
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:EHS50083.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Drug resistance transporter, Bcr/CflA subfamily
SCNpilot_expt_1000_bf_scaffold_6019_5
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2644..3447)
DNA (804bp) protein (268aa)
inositol-1-monophosphatase (EC:3.1.3.25)
inositol monophosphatase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035F0097
Inositol monophosphatase protein {ECO:0000313|EMBL:AJD41427.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
SCNpilot_expt_1000_bf_scaffold_6019_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3437..4327)
DNA (891bp) protein (297aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JFR3_AGRRK rbh
C32 tRNA thiolase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA rbh
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_6019_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4433..5362)
DNA (930bp) protein (310aa)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Glutaminase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJD6_RHITR
glutaminase A
SCNpilot_expt_1000_bf_scaffold_6019_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5437..6054)
DNA (618bp) protein (206aa)
30S ribosomal protein S4 n=1 Tax=Rhizobium mongolense RepID=UPI0003B67457 rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
SCNpilot_expt_1000_bf_scaffold_6019_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6319..6546
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Rhizobium leguminosarum RepID=C6B8A5_RHILS
Antitoxin protein {ECO:0000313|EMBL:AIC31468.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6019_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6543..6977
DNA (435bp) protein (145aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
DNA-binding protein n=4 Tax=Mesorhizobium RepID=V7G7D6_9RHIZ
PilT domain-containing protein
SCNpilot_expt_1000_bf_scaffold_6019_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6980..7315)
DNA (336bp) protein (112aa)
AAA ATPase n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AD14_RHIET
AAA ATPase {ECO:0000313|EMBL:EGE57625.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein; K06915
SCNpilot_expt_1000_bf_scaffold_6019_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7312..8490)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D106_RHILU
Strain MEJ076 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIP99315.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
conserved hypothetical protein; putative ATPase
SCNpilot_expt_1000_bf_scaffold_6019_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8621..9256)
DNA (636bp) protein (212aa)
Amino acid efflux protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JE33_AGRRK rbh
amino acid efflux protein rbh
Amino acid efflux protein {ECO:0000313|EMBL:ACM28379.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_6019_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9423..10541)
DNA (1119bp) protein (373aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183, ECO:0000313|EMBL:CDN53700.1}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
ald; alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase n=1 Tax=Rhizobium sp. CF080 RepID=J2S8L4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6019_15
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10695..11156
DNA (462bp) protein (154aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JKU8_9RHIZ
Alanine catabolic operon transcriptional regulator, putative {ECO:0000313|EMBL:CDN53699.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
SCNpilot_expt_1000_bf_scaffold_6019_16
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11248..11598
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HHW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE98412.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6019_17
unknown

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11757..12332
DNA (576bp) protein (192aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6019_18
unknown

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12454..13041
DNA (588bp) protein (196aa)

This feature has no annotations

Displaying 18 items

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