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SCNpilot_expt_1000_bf_scaffold_6033

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6033_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..509)
DNA (507bp) protein (169aa)
Outer membrane protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XRN1_RHIRD
omp; hypothetical protein
Outer membrane protein {ECO:0000313|EMBL:EHH07577.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
SCNpilot_expt_1000_bf_scaffold_6033_2
unknown

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comp(1443..1568)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6033_3
unknown

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comp(1599..1727)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6033_4
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2205..2462)
DNA (258bp) protein (86aa)
hypothetical protein id=12550404 bin=BDI species=Streptomyces sp. Wigar10 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterised protein {ECO:0000313|EMBL:CRD95534.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_6033_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2708..4228
DNA (1521bp) protein (507aa)
Putative K(+)/H(+) antiporter subunit A/B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX74_9RHIZ
Putative K(+)/H(+) antiporter subunit A/B {ECO:0000313|EMBL:EYR77493.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A
SCNpilot_expt_1000_bf_scaffold_6033_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4228..4572
DNA (345bp) protein (115aa)
pH adaption potassium efflux system protein n=3 Tax=Agrobacterium RepID=A9CK78_AGRT5
Strain MEJ076 contig_11, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02289.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
SCNpilot_expt_1000_bf_scaffold_6033_7
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4569..5699
DNA (1131bp) protein (377aa)
NADH/Ubiquinone/plastoquinone (Complex I) n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X4T5_OCHA4
K(+)/H(+) antiporter subunit D {ECO:0000313|EMBL:GAK70261.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
putative monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D
SCNpilot_expt_1000_bf_scaffold_6033_8
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5739..6206
DNA (468bp) protein (156aa)
Multisubunit K+/H+ antiporter subunit D n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PQI5_9RHIZ
phaD; multisubunit K+/H+ antiporter subunit D
Na(+) H(+) antiporter subunit D {ECO:0000313|EMBL:KIV62285.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_expt_1000_bf_scaffold_6033_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6203..6688
DNA (486bp) protein (162aa)
Putative monovalent cation/H+ antiporter subunit E n=2 Tax=Agrobacterium RepID=F0L5Y9_AGRSH
phaE; monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E
Na(+) H(+) antiporter subunit E {ECO:0000313|EMBL:AHK00365.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
SCNpilot_expt_1000_bf_scaffold_6033_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6685..6966
DNA (282bp) protein (94aa)
Putative K(+)/H(+) antiporter subunit F n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1R7_9RHIZ
Putative K(+)/H(+) antiporter subunit F {ECO:0000313|EMBL:EYR77489.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
multiple resistance and pH regulation protein F; K05563 multicomponent K+:H+ antiporter subunit F
SCNpilot_expt_1000_bf_scaffold_6033_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6963..7343
DNA (381bp) protein (127aa)
Putative K(+)/H(+) antiporter subunit G n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX70_9RHIZ
Putative K(+)/H(+) antiporter subunit G {ECO:0000313|EMBL:EYR77488.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phaG; multisubunit K+/H+ antiporter subunit G
SCNpilot_expt_1000_bf_scaffold_6033_12
unknown

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comp(7366..7551)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6033_13
Pseudomonas sp. CFII64, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7878..8840)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036099A6
Uncharacterized protein {ECO:0000313|EMBL:EPJ75794.1}; TaxID=911242 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII64.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6033_14
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9129..9551
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P036_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KKC32960.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6033_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9628..10044)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NN90_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31787.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
response regulator receiver domain-containing protein
SCNpilot_expt_1000_bf_scaffold_6033_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10057..11346)
DNA (1290bp) protein (430aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NRR5_9BRAD
PAS/PAC sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_6033_17
unknown

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comp(11346..12332)
DNA (987bp) protein (329aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6033_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13348..14520)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VYE3_RHILT rbh
Uncharacterized protein {ECO:0000313|EMBL:EJC78426.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_6033_19
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14578..15183)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5DVQ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESS71466.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
Displaying 19 items

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