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SCNpilot_expt_1000_bf_scaffold_866

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_866_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..632)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EBE901
Uncharacterized protein {ECO:0000313|EMBL:EKS42002.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(704..1585)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PTB1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42770.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1773..2699
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PUF6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42003.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2868..3290
DNA (423bp) protein (141aa)
Transcriptional regulator n=2 Tax=Bradyrhizobiaceae RepID=F7QL93_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42772.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
MucR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_866_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3441..3815
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PR38_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42005.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
chromosomal replication initiator, DnaA-like
SCNpilot_expt_1000_bf_scaffold_866_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3812..4447
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKA6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42006.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
DNA replication initiation ATPase
SCNpilot_expt_1000_bf_scaffold_866_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4451..4873)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PH74_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42007.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sufE-like protein; K02426 cysteine desulfuration protein SufE
SCNpilot_expt_1000_bf_scaffold_866_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4988..5449)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PUG0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42008.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5965..7716
DNA (1752bp) protein (584aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
multi-sensor signal transduction histidine kinase; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
histidine protein kinase n=1 Tax=Afipia birgiae RepID=UPI0003783167 rbh
SCNpilot_expt_1000_bf_scaffold_866_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7727..8086
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PR46_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42010.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidoglycan-binding domain 1
SCNpilot_expt_1000_bf_scaffold_866_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8089..8292
DNA (204bp) protein (68aa)
peptidoglycan-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002EBF7DB
Uncharacterized protein {ECO:0000313|EMBL:EKS42010.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidoglycan binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_866_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8299..8457)
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PWS1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07753.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_866_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8659..8862
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FD3ADE
Uncharacterized protein {ECO:0000313|EMBL:EGP07754.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8887..9876)
DNA (990bp) protein (330aa)
flagellar biosynthesis protein FlhF n=1 Tax=Afipia birgiae RepID=UPI0003731E76 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42012.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10020..10226
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000313E4C1
Uncharacterized protein {ECO:0000313|EMBL:EKS42013.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10277..11005
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMI7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42014.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11123..11467
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PR52_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42015.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11703..12326
DNA (624bp) protein (208aa)
YjbE family integral membrane protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKB6_9BRAD rbh
YjbE family integral membrane protein {ECO:0000313|EMBL:EKS42016.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
TerC family integral membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_866_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12345..12908)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PH82_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42017.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12905..13483)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PUG8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42018.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_866_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13508..15778)
DNA (2271bp) protein (757aa)
penicillin-binding protein 1A; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
1A family penicillin-binding protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PWS9_9BRAD rbh
1A family penicillin-binding protein {ECO:0000313|EMBL:EKS42788.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_866_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16093..16608
DNA (516bp) protein (172aa)
UPF0260 protein HMPREF9696_00332 n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PPR0_9BRAD rbh
UPF0260 protein HMPREF9696_00332 {ECO:0000256|HAMAP-Rule:MF_00676}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K09160 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_866_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16803..18389
DNA (1587bp) protein (529aa)
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKC0_9BRAD rbh
Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter {ECO:0000313|EMBL:EKS42021.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
major facilitator superfamily transporter rbh
SCNpilot_expt_1000_bf_scaffold_866_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18513..18791
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EC2059
Uncharacterized protein {ECO:0000313|EMBL:EKS42791.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_866_25
unknown

Not on your lists

18799..19341
DNA (543bp) protein (181aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_866_26
unknown

Not on your lists

comp(19388..19546)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_866_27
unknown

Not on your lists

comp(19543..20073)
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_866_28
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20131..20553)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369F975
exoI; nuclease
Nuclease (SNase-like) {ECO:0000313|EMBL:AFK52404.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_866_29
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20661..21773)
DNA (1113bp) protein (371aa)
Glycosyl transferase, group 1 n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FUZ8_9RHOB
UDP-D-galactose:(Glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase {ECO:0000313|EMBL:KFB10866.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
SCNpilot_expt_1000_bf_scaffold_866_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22180..22344
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000372D3DB
Uncharacterized protein {ECO:0000313|EMBL:EKS42028.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
Displaying items 1-30 of 111 in total

View Taxonomy