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SCNpilot_expt_1000_bf_scaffold_1013

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Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1013_1
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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560..1165
DNA (606bp) protein (202aa)
Response regulator with putative antiterminator output domain n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGP9_MESAW rbh
Two-component response regulator {ECO:0000313|EMBL:CDX32390.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
response regulator with putative antiterminator output domain rbh
SCNpilot_expt_1000_bf_scaffold_1013_2
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1162..2397
DNA (1236bp) protein (412aa)
Nitrate transporter component NrtA n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F0W5_9RHIZ rbh
Nitrate transporter component NrtA {ECO:0000313|EMBL:CCV09803.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
nitrate transporter component, NrtA; K02049 NitT/TauT family transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1013_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2703..4004
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037AE248 rbh
Bicarbonate-binding protein {ECO:0000313|EMBL:KKB11655.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
nitrate transporter component, NrtA; K15576 nitrate/nitrite transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1013_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4064..4957
DNA (894bp) protein (298aa)
bicarbonate ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EDFDD7
Bicarbonate ABC transporter permease {ECO:0000313|EMBL:KDR88113.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
nrtB; nitrate ABC transporter; K15577 nitrate/nitrite transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1013_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4873..5496)
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A477_RHIET
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1013_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5667..5789
DNA (123bp) protein (41aa)
nrtC; nitrate ABC transporter ATPase; K15578 nitrate/nitrite transport system ATP-binding protein [EC:3.6.3.-]
nitrate ABC transporter ATP-binding protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003759EE0
Cyanate ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC68051.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_1013_7
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5794..8244
DNA (2451bp) protein (817aa)
Nitrite reductase (NAD(P)H) {ECO:0000313|EMBL:CDX27526.1}; EC=1.7.1.4 {ECO:0000313|EMBL:CDX27526.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
nirB; nitrite reductase [NAD(P)H], large subunit protein; K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4] rbh
PREDICTED: nitrite reductase [NAD(P)H]-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1013C rbh
SCNpilot_expt_1000_bf_scaffold_1013_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8576..11251
DNA (2676bp) protein (892aa)
Nitrate reductase {ECO:0000313|EMBL:CDX17682.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDX17682.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
nitrate reductase (EC:1.7.99.4); K00372 nitrate reductase catalytic subunit [EC:1.7.99.4] rbh
Nitrate reductase n=3 Tax=Oligotropha carboxidovorans RepID=B6JE51_OLICO rbh
SCNpilot_expt_1000_bf_scaffold_1013_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11223..12677
DNA (1455bp) protein (485aa)
cysG2; multifunctional siroheme synthase CysG; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] rbh
Multifunctional siroheme synthase CysG n=2 Tax=Oligotropha carboxidovorans RepID=B6JE50_OLICO rbh
Multifunctional siroheme synthase CysG {ECO:0000313|EMBL:AEI05959.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1013_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12687..13883)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTL6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE09804.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1013_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13894..15042)
DNA (1149bp) protein (383aa)
Acyl-CoA dehydrogenase-like n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTL5_9BRAD rbh
Acyl-CoA dehydrogenase-like {ECO:0000313|EMBL:CCE09803.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
putative acyl-CoA dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_1013_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15438..17237)
DNA (1800bp) protein (600aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036808D8 rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS33228.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative GGDEF family protein rbh
SCNpilot_expt_1000_bf_scaffold_1013_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17575..17805)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0K7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34966.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1013_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17892..18812)
DNA (921bp) protein (307aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002EA8056 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33221.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
permease
SCNpilot_expt_1000_bf_scaffold_1013_15
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18885..19241)
DNA (357bp) protein (119aa)
beta-lactamase n=1 Tax=Afipia birgiae RepID=UPI00036963E7
Uncharacterized protein {ECO:0000313|EMBL:EGP09018.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1013_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19244..20551)
DNA (1308bp) protein (436aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIC6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP09017.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1013_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20627..20959
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003120628
Uncharacterized protein {ECO:0000313|EMBL:EGP09016.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1013_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21010..21681
DNA (672bp) protein (224aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2L2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34959.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1013_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21733..22299)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9B9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34958.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative polysaccharide biosynthesis/export; K01991 polysaccharide export outer membrane protein
SCNpilot_expt_1000_bf_scaffold_1013_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22375..23028)
DNA (654bp) protein (218aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
methionine sulfoxide reductase A; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0M7_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_1013_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23127..23444)
DNA (318bp) protein (106aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NXL9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33214.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1013_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23766..24032
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2K7_9BRAD
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
30S ribosomal protein S20
SCNpilot_expt_1000_bf_scaffold_1013_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25252..26715
DNA (1464bp) protein (488aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9B5_9BRAD rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein
SCNpilot_expt_1000_bf_scaffold_1013_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26946..28064
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Afipia birgiae RepID=UPI0002E5B5B4 rbh
SCNpilot_expt_1000_bf_scaffold_1013_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28098..29237
DNA (1140bp) protein (380aa)
DNA replication and repair protein RecF n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0J4_9BRAD rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
recF; DNA replication and repair protein; K03629 DNA replication and repair protein RecF rbh
SCNpilot_expt_1000_bf_scaffold_1013_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29581..32022
DNA (2442bp) protein (814aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5J9_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_1013_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32215..33636
DNA (1422bp) protein (474aa)
multidrug transporter MatE n=1 Tax=Afipia birgiae RepID=UPI00031ECB4E rbh
MATE efflux family protein {ECO:0000313|EMBL:EKS34948.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
multidrug efflux protein; K03327 multidrug resistance protein, MATE family rbh
SCNpilot_expt_1000_bf_scaffold_1013_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33713..33937
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0L5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33205.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1013_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34060..35427
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXK7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS33204.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1013_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35558..36934
DNA (1377bp) protein (459aa)
malonyl-CoA decarboxylase; K01578 malonyl-CoA decarboxylase [EC:4.1.1.9] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2J6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34944.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying items 1-30 of 64 in total

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