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SCNpilot_expt_1000_bf_scaffold_1153

Search features with annotation key words

Displaying items 1-30 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1153_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120..1706
DNA (1587bp) protein (529aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Phosphoglycerate dehydrogenase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PAR6_9BRAD rbh
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EKS35448.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1153_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1968..3260
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEP4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36818.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1153_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3242..3640
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEP4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36818.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1153_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3909..4901)
DNA (993bp) protein (331aa)
ABC transporter substrate-binding protein n=1 Tax=Afipia birgiae RepID=UPI00030C6C52 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36816.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1153_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5049..5990)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB45_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36815.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6460..7752
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4] rbh
Adenylosuccinate synthetase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P209_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_1153_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7839..9404
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2N0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36812.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9409..10035
DNA (627bp) protein (209aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCI1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36058.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1153_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10061..10279)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030DC2D4
Uncharacterized protein {ECO:0000313|EMBL:EKS36810.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10905..11879
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E31606 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36808.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1153_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12267..13022)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218V1_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:CDX33698.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_12
unknown

Not on your lists

comp(13015..13779)
DNA (765bp) protein (255aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14109..14438
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCH6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36053.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1153_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14732..15631)
DNA (900bp) protein (300aa)
RNA polymerase sigma 70 n=1 Tax=Afipia birgiae RepID=UPI0003825AE6 rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpoH; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
SCNpilot_expt_1000_bf_scaffold_1153_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15851..16930)
DNA (1080bp) protein (360aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] rbh
Pseudouridine synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7S8_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_1153_16
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17066..17752)
DNA (687bp) protein (229aa)
group 1 glycosyl transferase; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7T5_9BRAD
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFI51295.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_1153_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18460..19776
DNA (1317bp) protein (439aa)
O-antigen polymerase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219N3_RHOPB
O-antigen polymerase
O-antigen polymerase {ECO:0000313|EMBL:ABD86903.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1153_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19889..20221
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D82046
Uncharacterized protein {ECO:0000313|EMBL:EKS36050.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_19
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20556..21035)
DNA (480bp) protein (160aa)
UPI0003D0692A related cluster n=1 Tax=unknown RepID=UPI0003D0692A
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_1153_20
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21706..22383
DNA (678bp) protein (226aa)
Tax=RBG_16_Anaeromyxobacter_69_14_curated
SCNpilot_expt_1000_bf_scaffold_1153_21
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22416..23519
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7XUB1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMS32087.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_22
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23520..24899)
DNA (1380bp) protein (460aa)
UPI0003CDFE79 related cluster n=1 Tax=unknown RepID=UPI0003CDFE79 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESW79722.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
ABC transporter; K09691 lipopolysaccharide transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1153_23
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24889..25656)
DNA (768bp) protein (256aa)
Sugar ABC transporter permease n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HL62_9RHIZ rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
ABC transporter permease; K09690 lipopolysaccharide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1153_24
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(25722..26651)
DNA (930bp) protein (310aa)
Alr4488 protein n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YNS3_NOSS1
hypothetical protein
Alr4488 protein {ECO:0000313|EMBL:BAB76187.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
SCNpilot_expt_1000_bf_scaffold_1153_25
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(26663..27922)
DNA (1260bp) protein (420aa)
Alr4488 protein n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YNS3_NOSS1 rbh
hypothetical protein rbh
Alr4488 protein {ECO:0000313|EMBL:BAB76187.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
SCNpilot_expt_1000_bf_scaffold_1153_26
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(28467..30728)
DNA (2262bp) protein (754aa)
Alr4487 protein n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YNS4_NOSS1
hypothetical protein
Alr4487 protein {ECO:0000313|EMBL:BAB76186.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
SCNpilot_expt_1000_bf_scaffold_1153_27
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30995..32068
DNA (1074bp) protein (358aa)
similar to dTDP-D-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=2 Tax=cellular organisms RepID=C9Y8A1_9BURK
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1153_28
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32043..32945
DNA (903bp) protein (301aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3G4_ACISJ
SCNpilot_expt_1000_bf_scaffold_1153_29
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32942..33484
DNA (543bp) protein (181aa)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EGW53006.1}; EC=5.1.3.13 {ECO:0000313|EMBL:EGW53006.1};; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FJM5_9GAMM
SCNpilot_expt_1000_bf_scaffold_1153_30
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33481..34395
DNA (915bp) protein (305aa)
rmlD; dTDP-4-keto-L-rhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] rbh
dTDP-4-dehydrorhamnose reductase n=1 Tax=Azoarcus toluclasticus RepID=UPI000363F9E9 rbh
Putative dTDP-4-keto-L-rhamnose reductase {ECO:0000313|EMBL:CAI07380.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Displaying items 1-30 of 164 in total

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