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SCNpilot_expt_1000_bf_scaffold_1183

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1183_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1333
DNA (1332bp) protein (444aa)
Type IV secretory pathway VirD2 components n=2 Tax=Oligotropha carboxidovorans RepID=B6JHK0_OLICO rbh
type IV secretory pathway VirD2 components rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI06319.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1183_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1446..1700
DNA (255bp) protein (85aa)
Prevent-host-death protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUC1_NITWN
prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:ABA04120.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_1183_3
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1697..1957
DNA (261bp) protein (87aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Ribonuclease VapC n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUC0_NITWN
twitching motility protein PilT; K07062
SCNpilot_expt_1000_bf_scaffold_1183_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1984..4956)
DNA (2973bp) protein (991aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NUX0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32961.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transposase Tn3 family protein rbh
SCNpilot_expt_1000_bf_scaffold_1183_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5086..5718
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NRG3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32962.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Resolvase Protein rbh
SCNpilot_expt_1000_bf_scaffold_1183_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6163..7050)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3F0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32963.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1183_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7058..8059)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=2 Tax=cellular organisms RepID=K8NWT8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32964.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
D-isomer specific 2-hydroxyacid dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_1183_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8072..8890)
DNA (819bp) protein (273aa)
Phosphite transport system permease ptxC n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZV9_9BRAD rbh
Phosphite transport system permease ptxC {ECO:0000313|EMBL:EKS32965.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phosphonate ABC transporter, inner membrane subunit; K02042 phosphonate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1183_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8898..9758)
DNA (861bp) protein (287aa)
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NUX4_9BRAD rbh
Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:EKS32966.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1183_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9755..10606)
DNA (852bp) protein (284aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Phosphonate ABC transporter ATP-binding protein; K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28] rbh
Phosphonate ABC transporter, ATP-binding protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NRG9_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_1183_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11274..11939
DNA (666bp) protein (222aa)
TenA/Thi-4 family protein; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2] rbh
TenA/Thi-4 family protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHJ9_OLICO rbh
TenA/Thi-4 family protein {ECO:0000313|EMBL:AEI06320.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1183_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12097..14118
DNA (2022bp) protein (674aa)
Conjugal transfer protein traG n=2 Tax=Oligotropha carboxidovorans RepID=B6JHJ8_OLICO rbh
Conjugal transfer protein traG {ECO:0000313|EMBL:AEI06321.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
traG3; conjugal transfer protein traG; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_expt_1000_bf_scaffold_1183_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14122..14562
DNA (441bp) protein (147aa)
CopG-like domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHJ7_OLICO
CopG-like domain protein
CopG-like domain protein {ECO:0000313|EMBL:AEI06322.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1183_14
unknown

Not on your lists

14559..14666
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_15
unknown

Not on your lists

15101..16027
DNA (927bp) protein (309aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_16
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16382..17497)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036CADDC
Uncharacterized protein {ECO:0000313|EMBL:BAQ16499.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1183_17
unknown

Not on your lists

comp(17577..18737)
DNA (1161bp) protein (387aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_18
unknown

Not on your lists

comp(18893..19519)
DNA (627bp) protein (209aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_19
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19677..21428)
DNA (1752bp) protein (584aa)
Uncharacterized protein related to peptidase C14 n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NBZ6_DESTT
Uncharacterized protein {ECO:0000313|EMBL:BAO28390.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1183_20
bacterium YEK0313, Bacteria

Not on your lists

comp(21456..22361)
DNA (906bp) protein (302aa)
Uncharacterized protein {ECO:0000313|EMBL:CEJ14933.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_1183_21
unknown

Not on your lists

comp(22399..23130)
DNA (732bp) protein (244aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_22
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23162..23692)
DNA (531bp) protein (177aa)
Metal dependent phosphohydrolase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JR94_HYPDA
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ADJ24079.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_1183_23
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23883..24563)
DNA (681bp) protein (227aa)
TPR repeat-containing protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IXE5_METNO
Uncharacterized protein {ECO:0000313|EMBL:KJC59549.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1183_24
Dictyoglomus turgidum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

24838..25356
DNA (519bp) protein (173aa)
Peptidase M23 n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E2A3_DICTD
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ACK42380.1}; Flags: Precursor;; TaxID=515635 species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus turgidum (strain Z-1310 / DSM 6724).;"
SCNpilot_expt_1000_bf_scaffold_1183_25
unknown

Not on your lists

25385..25765
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_26
Salpingoeca rosetta, Salpingoeca, Choanoflagellida, Eukaryota

Not on your lists

25762..26283
DNA (522bp) protein (174aa)
Swarming motility protein YbiA n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) RepID=F2U0X9_SALR5
Swarming motility protein YbiA {ECO:0000313|EMBL:EGD80553.1}; TaxID=946362 species="Eukaryota; Choanoflagellida; Salpingoecidae; Salpingoeca.;" source="Salpingoeca rosetta (strain ATCC 50818 / BSB-021).;"
Swarming motility protein ybiA
SCNpilot_expt_1000_bf_scaffold_1183_27
unknown

Not on your lists

26592..27041
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_28
unknown

Not on your lists

27148..27291
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1183_29
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27406..28305
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=2 Tax=Oligotropha carboxidovorans RepID=F8BKP9_OLICM rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEI06332.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1183_30
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28495..29493
DNA (999bp) protein (333aa)
Conjugal transfer protein TrbB n=2 Tax=Oligotropha carboxidovorans RepID=B6JHP6_OLICO rbh
trbB3; conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11 rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AEI06333.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying items 1-30 of 76 in total

View Taxonomy