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SCNpilot_expt_1000_bf_scaffold_1459

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1459_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1928
DNA (1926bp) protein (642aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7F2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34303.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Sel1-like protein; K13582 localization factor PodJL
SCNpilot_expt_1000_bf_scaffold_1459_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2107..3033
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0Q3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34304.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07090 rbh
SCNpilot_expt_1000_bf_scaffold_1459_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3030..3806
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3R6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34305.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3803..5131)
DNA (1329bp) protein (443aa)
Metal ion (Mn2+/Fe2+) transporter (Nramp) family metal ion transporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYP8_9BRAD rbh
Metal ion (Mn2+/Fe2+) transporter (Nramp) family metal ion transporter {ECO:0000313|EMBL:EKS34306.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
manganese transp
SCNpilot_expt_1000_bf_scaffold_1459_5
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5219..6163)
DNA (945bp) protein (315aa)
MFS transporter, metabolite:H+ symporter n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGW0_9BRAD
MFS transporter, metabolite:H+ symporter {ECO:0000313|EMBL:ERF83686.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6271..7134
DNA (864bp) protein (288aa)
LysR family transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B6345F rbh
LysR family transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:BAR56411.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_expt_1000_bf_scaffold_1459_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7143..7835)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NVH7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34307.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K06953 rbh
SCNpilot_expt_1000_bf_scaffold_1459_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7842..10403)
DNA (2562bp) protein (854aa)
helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
helicase n=1 Tax=Afipia birgiae RepID=UPI0002D4522A rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34308.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1459_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10486..11700)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0Q5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34309.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
extracellular ligand-binding receptor
SCNpilot_expt_1000_bf_scaffold_1459_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11937..12863)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIP1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP09132.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12960..14012
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NVI1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34312.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor rbh
SCNpilot_expt_1000_bf_scaffold_1459_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14009..15697
DNA (1689bp) protein (563aa)
DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7G1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34313.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1459_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15765..16070
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000382E77F
Uncharacterized protein {ECO:0000313|EMBL:EKS34314.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16104..16634
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000307DEED
DNA-damage-inducible protein F {ECO:0000313|EMBL:EGP09128.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
SCNpilot_expt_1000_bf_scaffold_1459_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16579..17382
DNA (804bp) protein (268aa)
MATE efflux family protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3S6_9BRAD
MATE efflux family protein {ECO:0000313|EMBL:EKS34315.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cation efflux pump, DNA-damage-inducible protein
SCNpilot_expt_1000_bf_scaffold_1459_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17357..18451)
DNA (1095bp) protein (365aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIN6_9BRAD rbh
dihydroorotate dehydrogenase 2
SCNpilot_expt_1000_bf_scaffold_1459_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18448..18792)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F16CE4
Uncharacterized protein {ECO:0000313|EMBL:EKS33337.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18994..19620
DNA (627bp) protein (209aa)
Phage repressor n=2 Tax=Bradyrhizobiaceae RepID=F7QIN4_9BRAD rbh
Phage repressor {ECO:0000313|EMBL:EGP09125.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
peptidase S24
SCNpilot_expt_1000_bf_scaffold_1459_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19625..20098)
DNA (474bp) protein (158aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0R5_9BRAD
ybaK; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20115..21731)
DNA (1617bp) protein (539aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXY0_9BRAD
SCNpilot_expt_1000_bf_scaffold_1459_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21749..22399)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYQ9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34321.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22415..23341)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NVI9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34322.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
amino acid binding protein
SCNpilot_expt_1000_bf_scaffold_1459_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24611..25444
DNA (834bp) protein (278aa)
Putative glycosyl transferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIM9_9BRAD
Putative glycosyl transferase {ECO:0000313|EMBL:EGP09120.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_1459_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25435..26025)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYT8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34351.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_expt_1000_bf_scaffold_1459_25
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26187..26660)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXX4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33329.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1459_26
Deinococcus gobiensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(26941..27360)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) RepID=H8H0Y2_DEIGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFD27001.1}; TaxID=745776 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 /; I-0).;"
SCNpilot_expt_1000_bf_scaffold_1459_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27481..28602
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7J5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34353.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
FAD-binding dehydrogenase; K07077
SCNpilot_expt_1000_bf_scaffold_1459_28
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28690..30003
DNA (1314bp) protein (438aa)
General substrate transporter n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAA0_9BRAD
General substrate transporter {ECO:0000313|EMBL:EFI50394.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
major facilitator superfamily permease rbh
SCNpilot_expt_1000_bf_scaffold_1459_29
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30016..30378)
DNA (363bp) protein (121aa)
Photosynthetic reaction center protein n=2 Tax=Bradyrhizobiaceae RepID=F7QIM5_9BRAD
Photosynthetic reaction center protein {ECO:0000313|EMBL:EGP09116.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
photosynthetic reaction center protein
SCNpilot_expt_1000_bf_scaffold_1459_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30557..31564)
DNA (1008bp) protein (336aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3W0_9BRAD rbh
Displaying items 1-30 of 42 in total

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