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SCNpilot_expt_1000_bf_scaffold_1816

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1816_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..209)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH66_AFIFE
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52674.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
outer membrane efflux protein
SCNpilot_expt_1000_bf_scaffold_1816_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219..509)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130K6_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41483.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_1816_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(587..1093)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130K7_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41482.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_1816_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1183..1458)
DNA (276bp) protein (92aa)
Uncharacterized protein n=3 Tax=Bradyrhizobium RepID=I2QKA4_9BRAD
hypothetical protein
Copper-sensing transcriptional repressor CsoR family protein {ECO:0000313|EMBL:KGT77713.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_1000_bf_scaffold_1816_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2749..3186)
DNA (438bp) protein (146aa)
KLTH0D05698p n=1 Tax=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) RepID=C5DGJ0_LACTC id=5225052 bin=16ft_combo_ws3_JS1 species=Lachancea thermotolerans genus=Lachancea taxon_order=Saccharomycetales taxon_class=Saccharomycetes phylum=Ascomycota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Uncharacterized protein {ECO:0000313|EMBL:CEG07156.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_1816_6
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3433..4386
DNA (954bp) protein (318aa)
heavy-metal transporting P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper/silver-translocating P-type ATPase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QKA3_9BRAD
Copper/silver-translocating P-type ATPase {ECO:0000313|EMBL:EIG60209.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_1816_7
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4528..4932)
DNA (405bp) protein (135aa)
Transcriptional regulator, MerR family n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KD20_METEX
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EHP94572.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1816_8
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5073..5732
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI000363DD67
Uncharacterized protein {ECO:0000313|EMBL:EAU39793.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
cation efflux protein
SCNpilot_expt_1000_bf_scaffold_1816_9
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5755..5979)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00035E1BBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESZ64366.1}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
SCNpilot_expt_1000_bf_scaffold_1816_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6772..7398)
DNA (627bp) protein (209aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI00037CBB4F
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE65018.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_1816_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7395..8600)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00035DBB4F rbh
Arabinose ABC transporter permease {ECO:0000313|EMBL:ETR76803.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1816_12
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8692..10020)
DNA (1329bp) protein (443aa)
FAD-dependent oxidoreductase n=1 Tax=Afipia birgiae RepID=UPI0003818EFA
Putative flavoprotein involved in K+ transport {ECO:0000313|EMBL:EIG62880.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
putative secreted protein
SCNpilot_expt_1000_bf_scaffold_1816_13
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10070..10384)
DNA (315bp) protein (105aa)
ArsR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI00031BB940
ArsR family transcriptional regulator {ECO:0000313|EMBL:KJC33546.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1816_14
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10495..10872
DNA (378bp) protein (126aa)
Putative transcriptional regulator, arsR family arsR2 n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQR1_9BRAD
Putative transcriptional regulator, arsR family arsR2 {ECO:0000313|EMBL:CCD99732.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
putative transcriptional regulator, ArsR family
SCNpilot_expt_1000_bf_scaffold_1816_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11053..12111
DNA (1059bp) protein (353aa)
arsenic transporter n=1 Tax=Afipia birgiae RepID=UPI000319C2B8
arsB; arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
Arsenite efflux pump protein {ECO:0000313|EMBL:AEI08266.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1816_16
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12108..12506
DNA (399bp) protein (133aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
arsC; arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89QP0_BRADU
SCNpilot_expt_1000_bf_scaffold_1816_17
unknown

Not on your lists

12770..13861
DNA (1092bp) protein (364aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1816_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14435..14617
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:KGJ66494.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_1000_bf_scaffold_1816_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14788..14991
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NL52_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28245.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1816_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15058..15597
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QC42_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF02229.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_1816_21
unknown

Not on your lists

15594..15869
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1816_22
Dickeya zeae, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16008..16739)
DNA (732bp) protein (244aa)
hypothetical protein; K03424 TatD DNase family protein [EC:3.1.21.-]
Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. campestris (strain 8004) RepID=Q4UTY3_XANC8
TatD family hydrolase {ECO:0000313|EMBL:AJC66961.1}; TaxID=1427366 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya zeae EC1.;"
SCNpilot_expt_1000_bf_scaffold_1816_23
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16736..18010)
DNA (1275bp) protein (425aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|SAAS:SAAS00029421}; EC=6.3.4.20 {ECO:0000256|SAAS:SAAS00029421};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Uncharacterized protein n=2 Tax=Rhizobium RepID=L0LT76_RHITR
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1816_24
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18007..18843)
DNA (837bp) protein (279aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=L0LT51_RHITR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ENN86639.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_1816_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18869..20791)
DNA (1923bp) protein (641aa)
KAP P-loop domain-containing protein n=2 Tax=Rhizobium RepID=L0LPP6_RHITR
KAP P-loop domain-containing protein
KAP P-loop domain-containing protein {ECO:0000313|EMBL:AGB73338.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1816_26
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21134..21664)
DNA (531bp) protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:AHY49488.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_expt_1000_bf_scaffold_1816_27
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22172..23764)
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZA9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:BAR57418.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
Phage integrase family protein rbh
SCNpilot_expt_1000_bf_scaffold_1816_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24377..25453)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P858_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34578.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1816_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25785..26165
DNA (381bp) protein (127aa)
50S ribosomal protein L21 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1F9_9BRAD
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SCNpilot_expt_1000_bf_scaffold_1816_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26222..26491
DNA (270bp) protein (90aa)
50S ribosomal protein L27 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4I2_9BRAD
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
Displaying items 1-30 of 46 in total

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