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SCNpilot_expt_1000_bf_scaffold_1966

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1966_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1203..2300
DNA (1098bp) protein (366aa)
Lead, cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase {ECO:0000313|EMBL:EGP09906.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EGP09906.1};; EC=3.6.3.4 {ECO:0000313|EMBL:EGP09906.1};; EC=3.6.3.5 {ECO:0000313|EMBL:EGP09906.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
actP; copper-transporting P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFW4_9BRAD
SCNpilot_expt_1000_bf_scaffold_1966_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2557..3450)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBL3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS37000.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1966_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3484..4449)
DNA (966bp) protein (322aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Thioredoxin reductase n=2 Tax=Bradyrhizobiaceae RepID=F7QFW2_9BRAD rbh
thioredoxin reductase, FAD/NAD(P)-binding
SCNpilot_expt_1000_bf_scaffold_1966_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4719..5201
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF37_9BRAD">RepID=K8PF37_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36998.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1966_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5329..6084
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P339_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36997.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07090 rbh
SCNpilot_expt_1000_bf_scaffold_1966_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6103..6507)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P6B6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09901.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein; K15977 putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1966_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6672..6965)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P381_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35179.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1966_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7072..7542)
DNA (471bp) protein (157aa)
Transcription elongation factor GreA n=2 Tax=Bradyrhizobiaceae RepID=F7QFV6_9BRAD
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_expt_1000_bf_scaffold_1966_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7715..10240)
DNA (2526bp) protein (842aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
carB; carbamoyl-phosphate synthase large chain CarB (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Afipia broomeae ATCC 49717 PF33_9BRAD">RepID=K8PF33_9BRAD
SCNpilot_expt_1000_bf_scaffold_1966_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10267..11139)
DNA (873bp) protein (291aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
carB; carbamoyl phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFV5_9BRAD
SCNpilot_expt_1000_bf_scaffold_1966_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11350..12045)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P335_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36992.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
type 12 methyltransferase
SCNpilot_expt_1000_bf_scaffold_1966_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12215..12739
DNA (525bp) protein (175aa)
Non-specific DNA-binding protein Dps / iron-binding ferritin-like antioxidant protein / Ferroxidase {ECO:0000313|EMBL:EGP09895.1}; EC=1.16.3.1 {ECO:0000313|EMBL:EGP09895.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Non-specific DNA-binding protein Dps / iron-binding ferritin-like antioxidant protein / Ferroxidase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFV3_9BRAD rbh
Dps family DNA-binding stress response protein; K04047 starvation-inducible DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_1966_13
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12798..13604)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AB-629-G21 RepID=UPI00036E0B1C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACN17304.1}; TaxID=177437 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium.;" source="Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2).;"
SCNpilot_expt_1000_bf_scaffold_1966_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13623..14708)
DNA (1086bp) protein (362aa)
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V314_9BRAD rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFI52344.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1966_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14718..15908)
DNA (1191bp) protein (397aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
carA; carbamoyl phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=2 Tax=Bradyrhizobiaceae RepID=F7QFV0_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_1966_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16064..17656
DNA (1593bp) protein (531aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EGP09891.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EGP09891.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Long-chain-fatty-acid--CoA ligase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFU9_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_1966_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17662..18363
DNA (702bp) protein (234aa)
alpha/beta hydrolase n=1 Tax=Afipia birgiae RepID=UPI00037CBE08 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35169.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_1966_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18443..18898
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P679_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36986.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GatB/Yqey domain-containing protein; K09117 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1966_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18974..20584
DNA (1611bp) protein (537aa)
acetyl-coenzyme A synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] rbh
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXV6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35167.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1966_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20700..21218)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P867_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36984.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1966_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21225..21677)
DNA (453bp) protein (151aa)
Regulatory protein, ArsR n=2 Tax=Oligotropha carboxidovorans RepID=B6JC54_OLICO
regulatory protein ArsR
Uncharacterized protein {ECO:0000313|EMBL:AEI07522.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1966_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21670..21984)
DNA (315bp) protein (105aa)
ArsR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0002FFA7A7
Uncharacterized protein {ECO:0000313|EMBL:EKS36982.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1966_23
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22136..22561
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P154_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35166.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative amino acid efflux protein LysE family
Displaying 23 items

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