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SCNpilot_expt_1000_bf_scaffold_3015

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3015_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..567)
DNA (567bp) protein (189aa)
spermidine synthase n=1 Tax=Afipia birgiae RepID=UPI0002E111D3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39605.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

610..1587
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFS1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39604.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1681..2352)
DNA (672bp) protein (224aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMJ9_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_3015_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2379..3266)
DNA (888bp) protein (296aa)
TIGR00255 family protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PP94_9BRAD rbh
TIGR00255 family protein {ECO:0000313|EMBL:EKS40173.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3403..4743)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDF9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39601.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aminodeoxychorismate lyase; K07082 UPF0755 protein
SCNpilot_expt_1000_bf_scaffold_3015_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4980..6245)
DNA (1266bp) protein (422aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ88_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_3015_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6352..6591)
DNA (240bp) protein (80aa)
Acyl carrier protein n=8 Tax=Bradyrhizobiaceae RepID=ACP_NITWN
acpP; acyl carrier protein; K02078 acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_expt_1000_bf_scaffold_3015_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6891..7628)
DNA (738bp) protein (246aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PNR1_9BRAD rbh
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:EKS42454.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_3015_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7871..8824)
DNA (954bp) protein (318aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
malonyl CoA-ACP transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
ACP S-malonyltransferase n=1 Tax=Afipia birgiae RepID=UPI0002D41BBA rbh
SCNpilot_expt_1000_bf_scaffold_3015_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8973..9167
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PSD6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42450.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_3015_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9328..10548
DNA (1221bp) protein (407aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LE3_RHOP5 rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:ABJ07241.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_3015_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10832..11275
DNA (444bp) protein (148aa)
30S ribosomal protein S6 n=1 Tax=Afipia birgiae RepID=UPI0002D6F932
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_expt_1000_bf_scaffold_3015_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11281..11520
DNA (240bp) protein (80aa)
30S ribosomal protein S18 n=4 Tax=Bradyrhizobiaceae RepID=RS18_RHOPB
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3015_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11659..12618
DNA (960bp) protein (320aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002F7632E rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP08011.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3015_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12675..13274
DNA (600bp) protein (200aa)
50S ribosomal protein L9 n=1 Tax=Afipia birgiae RepID=UPI000310093B rbh
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 rbh
SCNpilot_expt_1000_bf_scaffold_3015_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13362..14237)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00035E6D0C rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42442.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14507..15766
DNA (1260bp) protein (420aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMH5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39583.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3015_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15958..17457
DNA (1500bp) protein (500aa)
dnaB; replicative DNA helicase DnaB (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12]
Replicative DNA helicase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAE1_9BRAD rbh
Replicative DNA helicase {ECO:0000313|EMBL:EKS39582.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3015_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17544..18608
DNA (1065bp) protein (355aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLZ7_9BRAD
SCNpilot_expt_1000_bf_scaffold_3015_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18571..18696
DNA (126bp) protein (42aa)
alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Alanine racemase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q9U3_RHOPT
SCNpilot_expt_1000_bf_scaffold_3015_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18709..19467
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003139438 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42435.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3015_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19595..19939)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030BA837
Uncharacterized protein {ECO:0000313|EMBL:EKS39579.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NHL repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_3015_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19882..20667)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFP6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39579.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NHL repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_3015_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20930..22372
DNA (1443bp) protein (481aa)
DNA repair protein RadA n=1 Tax=Afipia birgiae RepID=UPI0002E46D24 rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
SCNpilot_expt_1000_bf_scaffold_3015_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22619..23263
DNA (645bp) protein (215aa)
colicin V synthesis protein n=1 Tax=Afipia birgiae RepID=UPI0002F2D222 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39577.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cvpA; CvpA family protein; K03558 membrane protein required for colicin V production
SCNpilot_expt_1000_bf_scaffold_3015_26
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23307..24827
DNA (1521bp) protein (507aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacteri
purF; amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
Amidophosphoribosyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLZ3_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_3015_27
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24840..25475)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLH0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42431.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
type 12 methyltransferase
SCNpilot_expt_1000_bf_scaffold_3015_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25489..25965)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ62_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39575.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_3015_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26195..26941
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFP0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39574.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_3015_30
unknown

Not on your lists

27016..27579
DNA (564bp) protein (188aa)

This feature has no annotations

Displaying items 1-30 of 36 in total

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