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SCNpilot_expt_1000_bf_scaffold_3264

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3264_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(103..1227)
DNA (1125bp) protein (375aa)
PAS domain S-box protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P693_9BRAD
PAS domain S-box protein {ECO:0000313|EMBL:EKS37006.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_3264_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1299..2936)
DNA (1638bp) protein (546aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037BDB9F
PAS domain S-box protein {ECO:0000313|EMBL:EKS37006.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3264_3
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3271..3645
DNA (375bp) protein (125aa)
Phasin 2 n=2 Tax=Bradyrhizobiaceae RepID=F7QFW9_9BRAD
Phasin {ECO:0000313|EMBL:EKS35189.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
phasin 2
SCNpilot_expt_1000_bf_scaffold_3264_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3817..4245
DNA (429bp) protein (143aa)
Phasin n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P886_9BRAD
Phasin {ECO:0000313|EMBL:EKS37004.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phasin 2
SCNpilot_expt_1000_bf_scaffold_3264_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4718..5182
DNA (465bp) protein (155aa)
Putative integrase KpLE2 phage-like element n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SVU1_9BRAD
Prophage CP4-57 integrase {ECO:0000313|EMBL:CEG07150.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_3264_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5298..5996)
DNA (699bp) protein (233aa)
DNA-binding response regulator KdpE n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKF1_9BRAD rbh
DNA-binding response regulator KdpE {ECO:0000313|EMBL:EGP08320.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
two component transcriptional regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE rbh
SCNpilot_expt_1000_bf_scaffold_3264_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5993..8686)
DNA (2694bp) protein (898aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
osmosensitive K+ channel signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLL9_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_3264_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8708..10834)
DNA (2127bp) protein (709aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis
potassium-transporting ATPase B chain; K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12]
Potassium-transporting ATPase B chain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPU5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3264_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10824..11261)
DNA (438bp) protein (146aa)
kdpB; potassium-transporting ATPase subunit B (EC:3.6.3.12); K01547 K+-transporting ATPase ATPase B chain [EC:3.6.3.12]
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
Potassium-transporting ATPase B chain n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N5H1_RHOPA
SCNpilot_expt_1000_bf_scaffold_3264_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11291..13000)
DNA (1710bp) protein (570aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Mic
potassium-transporting ATPase subunit alpha (EC:3.6.3.12); K01546 K+-transporting ATPase ATPase A chain [EC:3.6.3.12] rbh
ATPase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035DA6BD rbh
SCNpilot_expt_1000_bf_scaffold_3264_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13720..14226
DNA (507bp) protein (169aa)
dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NVV5_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30318.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_3264_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14236..15060
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NPI7_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30319.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
HpcH/HpaI aldolase
SCNpilot_expt_1000_bf_scaffold_3264_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15043..15882)
DNA (840bp) protein (280aa)
glycosyltransferase (EC:2.4.1.-)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS75_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS30320.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_3264_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16333..18732)
DNA (2400bp) protein (800aa)
diguanylate phosphodiesterase n=1 Tax=Afipia birgiae RepID=UPI0002E284C0 rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS37003.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_1000_bf_scaffold_3264_15
unknown

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comp(19259..19420)
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 15 items

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