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SCNpilot_expt_1000_bf_scaffold_5003

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5003_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(447..656)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5I7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35999.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5003_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(966..3098)
DNA (2133bp) protein (711aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCB9_9BRAD rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:EKS35998.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA
SCNpilot_expt_1000_bf_scaffold_5003_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3396..4628
DNA (1233bp) protein (411aa)
Putative oxalate/formate antiporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRM3_9BRAD rbh
Putative oxalate/formate antiporter {ECO:0000313|EMBL:EGP06234.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_5003_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4730..5077
DNA (348bp) protein (116aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
panD; aspartate alpha-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase n=2 Tax=Bradyrhizobiaceae RepID=F7QRM2_9BRAD
SCNpilot_expt_1000_bf_scaffold_5003_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5115..6245
DNA (1131bp) protein (377aa)
8-amino-7-oxononanoate synthase; K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47] rbh
8-amino-7-oxononanoate synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAZ4_9BRAD rbh
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:EKS36750.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_5003_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6242..6883
DNA (642bp) protein (214aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
bioD; dithiobiotin synthetase (EC:6.3.3.3); K01935 dethiobiotin synthetase [EC:6.3.3.3] rbh
dithiobiotin synthetase n=1 Tax=Afipia birgiae RepID=UPI0002FD5C03 rbh
SCNpilot_expt_1000_bf_scaffold_5003_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6880..8139
DNA (1260bp) protein (420aa)
adenosylmethionine--8-amino-7-oxononanoate transaminase (EC:2.6.1.62); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] rbh
adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Afipia birgiae RepID=UPI0002F85982 rbh
Adenosylmethionine-8-amino-7-oxononanoate transaminase {ECO:0000313|EMBL:EKS35993.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_5003_8
unknown

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8506..8979
DNA (474bp) protein (158aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5003_9
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11229..11615
DNA (387bp) protein (129aa)
Transposase IS3/IS911 family protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RVK8_9SPHN
Transposase {ECO:0000313|EMBL:KKC26214.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
transposase IS3/IS911 family protein
SCNpilot_expt_1000_bf_scaffold_5003_10
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11612..12604
DNA (993bp) protein (331aa)
Integrase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HXP4_9SPHN
Integrase {ECO:0000313|EMBL:KEO86841.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
transposase, orfB
SCNpilot_expt_1000_bf_scaffold_5003_11
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12854..13390
DNA (537bp) protein (179aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
O-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:ADX43995.1}; EC=6.2.1.26 {ECO:0000313|EMBL:ADX43995.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
PREDICTED: probable 4-coumarate--CoA ligase 1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17493
SCNpilot_expt_1000_bf_scaffold_5003_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13336..14034)
DNA (699bp) protein (233aa)
transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0003766706 rbh
Transcriptional activator FtrB {ECO:0000313|EMBL:CEG07058.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Crp family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_5003_13
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14244..15035
DNA (792bp) protein (264aa)
MFS transporter n=1 Tax=Afipia birgiae RepID=UPI0002E5AD1E
Nitrite extrusion protein {ECO:0000313|EMBL:CCE04617.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
nitrite extrusion protein; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
Displaying 13 items

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