ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2453

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2453_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29..589)
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Acidovorax sp. KKS102 RepID=K0I061_9BURK rbh
frr; ribosome recycling factor rbh
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_2
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(639..1361)
DNA (723bp) protein (241aa)
pyrH; uridylate kinase (EC:2.7.4.22) rbh
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Uridylate kinase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T519_ACIDE rbh
SCNpilot_expt_1000_bf_scaffold_2453_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1421..2347)
DNA (927bp) protein (309aa)
Elongation factor Ts n=1 Tax=Acidovorax sp. KKS102 RepID=K0HRH3_9BURK rbh
tsf; elongation factor Ts rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2454..3206)
DNA (753bp) protein (251aa)
30S ribosomal protein S2 n=1 Tax=Acidovorax sp. KKS102 RepID=K0HXB5_9BURK rbh
rpsB; 30S ribosomal protein S2 rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_5
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3394..4749
DNA (1356bp) protein (452aa)
amidase (EC:3.5.1.4) rbh
Amidase {ECO:0000313|EMBL:AFU45521.1}; EC=3.5.1.4 {ECO:0000313|EMBL:AFU45521.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Amidase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I942_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_2453_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4802..6034
DNA (1233bp) protein (411aa)
D-amino-acid dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I056_9BURK rbh
D-amino-acid dehydrogenase rbh
D-amino-acid dehydrogenase {ECO:0000313|EMBL:AFU45520.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6077..7657
DNA (1581bp) protein (527aa)
Carbohydrate kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2V3_9BURK rbh
carbohydrate kinase rbh
Carbohydrate kinase {ECO:0000313|EMBL:AFU45519.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7664..8413)
DNA (750bp) protein (250aa)
Helix-turn-helix, AraC domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HRG4_9BURK rbh
helix-turn-helix domain-containing protein rbh
Helix-turn-helix, AraC domain-containing protein {ECO:0000313|EMBL:AFU45518.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8518..9489
DNA (972bp) protein (324aa)
Putative lipase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HXA0_9BURK rbh
lipase rbh
Putative lipase {ECO:0000313|EMBL:AFU45517.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_10
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9594..10145)
DNA (552bp) protein (184aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Ribonuclease R n=1 Tax=Acidovorax sp. KKS102 RepID=K0I940_9BURK
ribonuclease R
SCNpilot_expt_1000_bf_scaffold_2453_11
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10478..11386
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Neisseria sp. oral taxon 020 str. F0370 RepID=L1NJ67_9NEIS
Uncharacterised protein {ECO:0000313|EMBL:CRE25071.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_2453_12
unknown

Not on your lists

11393..11608
DNA (216bp) protein (72aa)
hypothetical protein id=12551915 bin=BDI species=Curvibacter lanceolatus genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_2453_13
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12512..15244)
DNA (2733bp) protein (911aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HRE3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:AFU45513.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2453_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16192..16416
DNA (225bp) protein (75aa)
Lytic transglycosylase catalytic subunit n=1 Tax=Acidovorax sp. KKS102 RepID=K0HX64_9BURK
lytic transglycosylase catalytic subunit
Lytic transglycosylase catalytic subunit {ECO:0000313|EMBL:AFU45512.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16413..17006
DNA (594bp) protein (198aa)
Lytic transglycosylase catalytic subunit n=1 Tax=Acidovorax sp. KKS102 RepID=K0HX64_9BURK rbh
lytic transglycosylase catalytic subunit rbh
Lytic transglycosylase catalytic subunit {ECO:0000313|EMBL:AFU45512.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17279..18523
DNA (1245bp) protein (415aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1) rbh
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Serine hydroxymethyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I924_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_2453_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18545..18994
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=1 Tax=Acidovorax sp. KKS102 RepID=K0I038_9BURK
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19270..20172
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2S9_9BURK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFU45509.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_2453_19
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20370..22184)
DNA (1815bp) protein (605aa)
5'-nucleotidase domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HRD5_9BURK rbh
5'-nucleotidase domain-containing protein {ECO:0000313|EMBL:AFU45508.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
5'-nucleotidase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2453_20
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22221..23318)
DNA (1098bp) protein (366aa)
chorismate synthase (EC:4.2.3.5) rbh
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Chorismate synthase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HX59_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_2453_21
unknown

Not on your lists

comp(24495..24824)
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2453_22
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24972..25262
DNA (291bp) protein (97aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I918_9BURK
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AFU45506.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Displaying 22 items

View Taxonomy