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SCNpilot_expt_1000_bf_scaffold_2191

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2191_1
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..254
DNA (252bp) protein (84aa)
4,5-dihydroxyphthalate decarboxylase; K04102 4,5-dihydroxyphthalate decarboxylase [EC:4.1.1.55]
4,5-dihydroxyphthalate decarboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAN2_PELHB
4,5-dihydroxyphthalate decarboxylase {ECO:0000313|EMBL:AEQ52555.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_2191_2
bacterium YEK0313, Bacteria

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comp(259..1749)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HZP9_9BRAD rbh
Tripartite tricarboxylate transporter TctA family protein {ECO:0000313|EMBL:CEJ09959.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2191_3
bacterium YEK0313, Bacteria

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comp(1746..2267)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YLC0_9BRAD
Tripartite tricarboxylate transporter TctB family protein {ECO:0000313|EMBL:CEJ09960.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2191_4
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2344..3336)
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YLC1_9BRAD rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHR02214.1}; Flags: Precursor;; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_expt_1000_bf_scaffold_2191_5
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3540..3953
DNA (414bp) protein (138aa)
endoribonuclease n=1 Tax=gamma proteobacterium SCGC AB-629-P17 RepID=UPI000362563F
Putative plasmid stability {ECO:0000313|EMBL:AHG55811.1}; Putative translational inhibition {ECO:0000313|EMBL:AET17165.1}; Putative translational inhibition protein {ECO:0000313|EMBL:AHG55608.1}; TaxID=573 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_2191_6
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4029..4280)
DNA (252bp) protein (84aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1V7_AZOSB
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CAL92812.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_2191_7
bacterium YEK0313, Bacteria

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comp(4405..5472)
DNA (1068bp) protein (356aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW38_9RHIZ rbh
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:CEJ15059.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2191_8
bacterium YEK0313, Bacteria

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comp(5482..6501)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00037F7B2E rbh
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ15060.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2191_9
bacterium YEK0313, Bacteria

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comp(6511..7236)
DNA (726bp) protein (242aa)
ABC transporter ATP-binding protein n=1 Tax=Massilia niastensis RepID=UPI00036D81FE rbh
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ15061.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
livF; High-affinity branched-chain amino acid transport ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2191_10
bacterium YEK0313, Bacteria

Not on your lists

comp(7233..8018)
DNA (786bp) protein (262aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R951_9RHOB rbh
Lipopolysaccharide export system ATP-binding protein LptB {ECO:0000313|EMBL:CEJ15062.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter ATPase; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2191_11
bacterium YEK0313, Bacteria

Not on your lists

comp(8102..9322)
DNA (1221bp) protein (407aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW42_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CEJ15063.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2191_12
bacterium YEK0313, Bacteria

Not on your lists

9445..10065
DNA (621bp) protein (207aa)
Regulatory protein, TetR n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CBN6_9RHOB
Putative HTH-type transcriptional regulator YvdT {ECO:0000313|EMBL:CEJ15064.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2191_13
bacterium YEK0313, Bacteria

Not on your lists

10109..11608
DNA (1500bp) protein (500aa)
O-succinylbenzoic acid--CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037D9689 rbh
Long-chain-fatty-acid--CoA ligase FadD13 {ECO:0000313|EMBL:CEJ15066.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_2191_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11612..12256)
DNA (645bp) protein (215aa)
Penicillin acylase II (EC:3.5.1.11); K01434 penicillin amidase [EC:3.5.1.11]
penicillin acylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003028CA2
Penicillin acylase {ECO:0000313|EMBL:AHY59670.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_expt_1000_bf_scaffold_2191_15
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12199..13944)
DNA (1746bp) protein (582aa)
peptidase S45 penicillin amidase; K01434 penicillin amidase [EC:3.5.1.11]
penicillin acylase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00036A531F
Penicillin acylase {ECO:0000313|EMBL:KGM56085.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
SCNpilot_expt_1000_bf_scaffold_2191_16
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14222..14947
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IRK7_RHIML
TetR family transcriptional regulator
Putative transcriptional regulator, TetR family protein {ECO:0000313|EMBL:CAC49274.2}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_2191_17
unknown

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14944..15099
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2191_18
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15078..15953
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030ADB07 rbh
hypothetical protein; K01993 HlyD family secretion protein rbh
Secretion protein HlyD {ECO:0000313|EMBL:ABG61534.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_2191_19
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15950..16795
DNA (846bp) protein (282aa)
ABC transporter related protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M40_MESSB
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ABG61535.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Displaying 19 items

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