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SCNpilot_expt_1000_bf_scaffold_2228

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2228_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..275)
DNA (273bp) protein (91aa)
DNA repair protein radA n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYS7_HYPDA
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_2228_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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455..1564
DNA (1110bp) protein (370aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Carboxynorspermidine decarboxylase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGE8_9RHIZ rbh
carboxynorspermidine decarboxylase rbh
SCNpilot_expt_1000_bf_scaffold_2228_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1598..2368
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EAC01B rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:ETR74903.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_expt_1000_bf_scaffold_2228_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2564..3787
DNA (1224bp) protein (408aa)
Major facilitator superfamily protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JME2_9PROT rbh
major facilitator transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_expt_1000_bf_scaffold_2228_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3943..5916)
DNA (1974bp) protein (658aa)
Acetoacetyl-CoA synthetase {ECO:0000313|EMBL:EKF40897.1}; EC=6.2.1.16 {ECO:0000313|EMBL:EKF40897.1};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
acetoacetyl-CoA synthase; K01907 acetoacetyl-CoA synthetase [EC:6.2.1.16]
Acetoacetyl-CoA synthetase n=1 Tax=Nitratireductor indicus C115 RepID=K2PIA8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2228_6
unknown

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6238..7980
DNA (1743bp) protein (581aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361DAAB
Uncharacterized protein {ECO:0000313|EMBL:CPR17349.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein; K07289 AsmA protein
SCNpilot_expt_1000_bf_scaffold_2228_7
unknown

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comp(8032..8697)
DNA (666bp) protein (222aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:CPR20394.1}; EC=2.1.1.77 {ECO:0000313|EMBL:CPR20394.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
protein-L-isoaspartate(D-aspartate) O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDG1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2228_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8916..9791
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI0002E57BF0 rbh
ABC transporter permease {ECO:0000313|EMBL:KJC47790.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2228_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9807..10958
DNA (1152bp) protein (384aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YD09_9BRAD rbh
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2228_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10955..11713
DNA (759bp) protein (253aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I3J2_9BRAD rbh
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2228_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11718..12554
DNA (837bp) protein (279aa)
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89C68_BRADU rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETR74748.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2228_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13225..13752
DNA (528bp) protein (176aa)
fatty-acid--CoA ligase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000361F2CD
Fatty-acid--CoA ligase {ECO:0000313|EMBL:ETR74749.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative fatty-acid--CoA ligase
Displaying 12 items

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