ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2577

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2577_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..460
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGZ3_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB66835.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2577_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

464..1093
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DD57_SPHYA
Membrane protein {ECO:0000313|EMBL:KGE02286.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein; K00389 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_2577_3
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1181..2692
DNA (1512bp) protein (504aa)
sulfatase; K01130 arylsulfatase [EC:3.1.6.1] rbh
Arylsulfatase A family protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AJY8_9SPHN rbh
Arylsulfatase A family protein {ECO:0000313|EMBL:EJL32971.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_2577_4
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2781..2996)
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035F3646
Uncharacterized protein {ECO:0000313|EMBL:EIM24580.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_2577_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3125..4696
DNA (1572bp) protein (524aa)
aslA; arylsulfatase (EC:3.1.6.1); K01130 arylsulfatase [EC:3.1.6.1] rbh
Arylsulfatase A family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKT7_9RHIZ rbh
Arylsulfatase A family protein {ECO:0000313|EMBL:EIM24579.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_2577_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4813..5214
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380156C
Membrane protein {ECO:0000313|EMBL:KGE02289.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2577_7
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5266..6294
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003718933 rbh
nonspecific acid phosphatase
Nonspecific acid phosphatase {ECO:0000313|EMBL:ACV33556.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_2577_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6408..7346
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JV87_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24741.1}; Flags: Precursor;; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_2577_9
unknown

Not on your lists

comp(7363..8967)
DNA (1605bp) protein (535aa)
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYM1_RHOP2
Drug resistance transporter EmrB/QacA subfamily {ECO:0000313|EMBL:CPR22041.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
EmrB/QacA family drug resistance transporter
SCNpilot_expt_1000_bf_scaffold_2577_10
unknown

Not on your lists

comp(8993..10228)
DNA (1236bp) protein (412aa)
Secretion protein HlyD family protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2C0_STAND rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:CPR22042.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
secretion protein HlyD; K03543 multidrug resistance protein A rbh
SCNpilot_expt_1000_bf_scaffold_2577_11
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10363..10998
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IFZ6_BEII9
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACB95735.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_2577_12
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11240..12670)
DNA (1431bp) protein (477aa)
degQ; serine protease do-like (EC:3.4.21.-); K04772 serine protease DegQ [EC:3.4.21.-]
Probable serine protease do-like {ECO:0000313|EMBL:ABQ39636.1}; EC=3.4.21.- {ECO:0000313|EMBL:ABQ39636.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Probable serine protease do-like n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ETZ2_BRASB
SCNpilot_expt_1000_bf_scaffold_2577_13
unknown

Not on your lists

comp(12779..13114)
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2577_14
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13301..13726)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Hahella ganghwensis RepID=UPI000381933D
Membrane protein {ECO:0000313|EMBL:KAI93372.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2577_15
unknown

Not on your lists

13744..14001
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2577_16

Not on your lists

14161..16368
DNA (2208bp) protein (736aa)
Putative cell division (Penicillin-binding family) protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M6C6_RHIL3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN78042.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cell division (penicillin-binding family) protein rbh
SCNpilot_expt_1000_bf_scaffold_2577_17
unknown

Not on your lists

16460..16861
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2577_18
unknown

Not on your lists

17090..17302
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2577_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17442..17858
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035FE43A
Predicted small integral membrane protein {ECO:0000313|EMBL:CDM64399.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2577_20
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17883..18872)
DNA (990bp) protein (330aa)
DNA polymerase LigD, ligase domain-containing protein; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
DNA polymerase LigD, ligase domain protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHK1_HYPSM rbh
DNA polymerase LigD, ligase domain protein {ECO:0000313|EMBL:CCB65651.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2577_21
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18881..19954)
DNA (1074bp) protein (358aa)
DNA polymerase LigD, polymerase domain-containing protein; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
DNA polymerase LigD, polymerase domain protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHK0_HYPSM rbh
DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:CCB65650.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2577_22
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19906..20517)
DNA (612bp) protein (204aa)
DNA polymerase LigD, polymerase domain-containing protein; K01971 DNA ligase (ATP) [EC:6.5.1.1]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000366A22A
DNA polymerase LigD, polymerase domain protein {ECO:0000313|EMBL:CCB65650.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2577_23
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20530..21396)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000365D1E1 rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Ku family containing protein; K10979 DNA end-binding protein Ku
SCNpilot_expt_1000_bf_scaffold_2577_24
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21730..22821
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q472W3_CUPPJ rbh
Uncharacterized protein {ECO:0000313|EMBL:KDP84142.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein rbh
Displaying 24 items

View Taxonomy