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SCNpilot_expt_1000_bf_scaffold_2708

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2708_1
unknown

Not on your lists

comp(3..146)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2708_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

708..1418
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378A4BB
Uncharacterized protein {ECO:0000313|EMBL:AHB49517.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2708_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1544..2314
DNA (771bp) protein (257aa)
oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003611EC0
oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2708_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2322..2681)
DNA (360bp) protein (120aa)
L-fuculose phosphate aldolase (EC:4.1.2.17)
L-fuculose phosphate aldolase {ECO:0000313|EMBL:AGK58908.1}; EC=4.1.2.17 {ECO:0000313|EMBL:AGK58908.1};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
L-fuculose phosphate aldolase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7A0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2708_5
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3055..4206
DNA (1152bp) protein (384aa)
Cobalamin synthesis protein CobW, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRD9_RHOCS rbh
cobW; cobalamin synthesis protein CobW rbh
Cobalamin synthesis protein CobW, putative {ECO:0000313|EMBL:ACI98025.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_2708_6
Monoraphidium neglectum, Monoraphidium, Sphaeropleales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(4347..4790)
DNA (444bp) protein (148aa)
GCN5-related N-acetyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J4Z7_HYPSM
Histone acetyltransferase HPA2 {ECO:0000313|EMBL:KIZ03791.1}; TaxID=145388 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium.;" source="Monoraphidium neglectum.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_2708_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4956..6863)
DNA (1908bp) protein (636aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAC9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:AHB47603.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2708_8
unknown

Not on your lists

7156..7521
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2708_9
unknown

Not on your lists

comp(7597..8937)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000367FACF rbh
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:CPR14722.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
pyrrolo-quinoline quinone rbh
SCNpilot_expt_1000_bf_scaffold_2708_10
unknown

Not on your lists

comp(9127..9852)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000377A83A
Uncharacterized protein {ECO:0000313|EMBL:CPR14719.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2708_11
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10023..12434)
DNA (2412bp) protein (804aa)
carbamoyl-phosphate synthase L chain ATP-binding; K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
Carbamoyl-phosphate synthase L chain ATP-binding n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UEN6_METS4
Carbamoyl-phosphate synthase L chain ATP-binding {ECO:0000313|EMBL:ACA16776.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_2708_12
unknown

Not on your lists

comp(12593..15082)
DNA (2490bp) protein (830aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036845A0 rbh
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
organic solvent tolerance protein; K04744 LPS-assembly protein rbh
SCNpilot_expt_1000_bf_scaffold_2708_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15084..16184)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361CF83 rbh
permease YjgP/YjgQ family protein; K11720 lipopolysaccharide export system permease protein rbh
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:ADJ23508.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_2708_14
unknown

Not on your lists

comp(16181..17413)
DNA (1233bp) protein (411aa)
Permease YjgP/YjgQ family protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYQ5_HYPDA rbh
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:CPR21622.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
permease YjgP/YjgQ family protein; K07091 lipopolysaccharide export system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2708_15
unknown

Not on your lists

comp(17587..18339)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037B5935
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:CPR22520.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_2708_16
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18483..18734
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SI68_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB49639.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2708_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18744..19925
DNA (1182bp) protein (394aa)
FAD-binding monooxygenase protein; K00480 salicylate hydroxylase [EC:1.14.13.1] rbh
Monooxygenase FAD-binding protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPJ7_HYPDA rbh
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:ADJ21888.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 17 items

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