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SCNpilot_expt_1000_bf_scaffold_2738

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2738_1
bacterium YEK0313, Bacteria

Not on your lists

3..548
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G4S5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEJ13098.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2738_2
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

565..1233
DNA (669bp) protein (223aa)
ATPase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4769
hypothetical protein; K06927
Tax=RBG_16_Gamma2_64_11_curated
SCNpilot_expt_1000_bf_scaffold_2738_3
unknown

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comp(1230..1904)
DNA (675bp) protein (225aa)
Regulatory protein TetR n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I0D7_RHOVT
Uncharacterized protein {ECO:0000313|EMBL:CPR20079.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
regulatory protein TetR
SCNpilot_expt_1000_bf_scaffold_2738_4
unknown

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2119..2859
DNA (741bp) protein (247aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2738_5
unknown

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2888..3094
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2738_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3843..4349
DNA (507bp) protein (169aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
dapF; diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBV4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2738_7
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4357..5691
DNA (1335bp) protein (445aa)
MiaB-like Radical SAM protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3Z5_9RHOB rbh
MiaB-like Radical SAM protein {ECO:0000313|EMBL:EAQ01131.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
MiaB-like tRNA modifying protein
SCNpilot_expt_1000_bf_scaffold_2738_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5688..6839
DNA (1152bp) protein (384aa)
Signal recognition particle receptor FtsY n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JD53_HYPSM rbh
ftsY; cell division protein FtsY; K03110 fused signal recognition particle receptor rbh
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2738_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6923..7555
DNA (633bp) protein (211aa)
Septation protein A n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9N6_9RHIZ
Septation protein A {ECO:0000313|EMBL:AHB47451.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Intracellular septation protein A
SCNpilot_expt_1000_bf_scaffold_2738_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7664..8278
DNA (615bp) protein (205aa)
Probable intracellular septation protein A n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BHM8_9RHIZ
intracellular septation protein A
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_2738_11
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8442..8999
DNA (558bp) protein (186aa)
Transcriptional regulator, MarR family n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JEN9_HYPSM
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CCB67836.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_2738_12
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9080..10120)
DNA (1041bp) protein (347aa)
asdB; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] rbh
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000313|EMBL:CCB67837.1}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000313|EMBL:CCB67837.1};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (st
Aspartate-semialdehyde dehydrogenase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JEP0_HYPSM rbh
SCNpilot_expt_1000_bf_scaffold_2738_13
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10479..10955
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RSH7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD99163.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2738_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11189..12661)
DNA (1473bp) protein (491aa)
AMP nucleosidase; K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2X9_9PROT rbh
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_2738_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12986..13222
DNA (237bp) protein (79aa)
tynA; tyramine oxidase; K00276 primary-amine oxidase [EC:1.4.3.21]
Amine oxidase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J117_RHOP2
Amine oxidase {ECO:0000256|RuleBase:RU000672}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
SCNpilot_expt_1000_bf_scaffold_2738_16
unknown

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comp(13126..13791)
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2738_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13818..14867
DNA (1050bp) protein (350aa)
Amine oxidase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQZ3_TISMK rbh
Amine oxidase {ECO:0000256|RuleBase:RU000672}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
maoI; tyramine oxidase rbh
SCNpilot_expt_1000_bf_scaffold_2738_18
Solibacillus silvestris, Solibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15067..15834
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Bacillus sp. L1(2012) RepID=UPI00034660B8
xylanase/chitin deacetylase
Predicted xylanase/chitin deacetylase {ECO:0000313|EMBL:BAK15258.1}; TaxID=1002809 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Solibacillus.;" source="Solibacillus silvestris (strain StLB046) (Bacillus silvestris).;"
SCNpilot_expt_1000_bf_scaffold_2738_19
bacterium YEK0313, Bacteria

Not on your lists

16113..17330
DNA (1218bp) protein (406aa)
major facilitator transporter n=1 Tax=Erwinia carotovora RepID=UPI0001A42726 rbh
Fosmidomycin resistance protein {ECO:0000313|EMBL:CEJ14825.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
major facilitator superfamily protein rbh
SCNpilot_expt_1000_bf_scaffold_2738_20
unknown

Not on your lists

17607..17927
DNA (321bp) protein (107aa)
Ferredoxin n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3W6_9RHIZ
2Fe-2S ferredoxin {ECO:0000313|EMBL:CPR21285.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ferredoxin
SCNpilot_expt_1000_bf_scaffold_2738_21
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18036..18257
DNA (222bp) protein (74aa)
trxB; disulfide reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Ferredoxin--NADP reductase {ECO:0000256|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000256|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000256|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000256|HAMAP-Rule:MF_01685};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Ferredoxin--NADP reductase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBQ9_HYPSM
Displaying 21 items

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