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SCNpilot_expt_1000_bf_scaffold_8800

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8800_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(111..1619)
DNA (1509bp) protein (503aa)
AMP-dependent synthetase and ligase id=4840557 bin=GWC2_Methylomirabilis_70_16 species=Streptosporangium roseum genus=Streptosporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
long-chain-fatty-acid-CoA ligase
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_8800_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1621..2424)
DNA (804bp) protein (268aa)
UPI0003D3E9E3 related cluster n=1 Tax=unknown RepID=UPI0003D3E9E3
Transcriptional regulator {ECO:0000313|EMBL:GAD24625.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8800_3
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3123..4031)
DNA (909bp) protein (303aa)
TRAP-type transport system permease large protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TY62_9PROT rbh
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KJB94421.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative TRAP-type C4-dicarboxylate transport system, large permease component (dctm subunit) rbh
SCNpilot_expt_1000_bf_scaffold_8800_4
unknown

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4145..4462
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8800_5
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4425..4988)
DNA (564bp) protein (188aa)
C4-dicarboxylate transport system permease small protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TY61_9PROT
C4-dicarboxylate transport system permease small protein {ECO:0000313|EMBL:EDP62684.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
dctQ; TRAP dicarboxylate transporter subunit DctQ
SCNpilot_expt_1000_bf_scaffold_8800_6
unknown

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5332..5631
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8800_7
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6085..6834)
DNA (750bp) protein (250aa)
Phytanoyl-CoA dioxygenase family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWX8_9PROT rbh
Phytanoyl-CoA dioxygenase family protein {ECO:0000313|EMBL:EDP62915.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
phytanoyl-CoA dioxygenase rbh
SCNpilot_expt_1000_bf_scaffold_8800_8
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7091..8104
DNA (1014bp) protein (338aa)
Transcriptional regulator, LacI family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWX9_9PROT rbh
Transcriptional regulator, LacI family protein {ECO:0000313|EMBL:EDP62916.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_8800_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8709..9341
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003775ECA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL06150.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_8800_10
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9325..9714
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZH85_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM93232.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_8800_11
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9755..10516
DNA (762bp) protein (254aa)
undecaprenyl pyrophosphate synthase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31]
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
UDP pyrophosphate synthase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000381498A
SCNpilot_expt_1000_bf_scaffold_8800_12
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10565..12142
DNA (1578bp) protein (526aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BZB8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ESS73169.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
SCNpilot_expt_1000_bf_scaffold_8800_13
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12149..14329
DNA (2181bp) protein (727aa)
Von willebrand factor type A-like domain n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5BIP4_9GAMM rbh
Von willebrand factor type A-like domain {ECO:0000313|EMBL:ESS73170.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
von Willebrand factor type A domain-containing protein; K07114 uncharacterized protein
SCNpilot_expt_1000_bf_scaffold_8800_14
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14657..15727)
DNA (1071bp) protein (357aa)
aidB; acyl-CoA dehydrogenase (EC:1.3.99.-); K09456 putative acyl-CoA dehydrogenase
Putative acyl-CoA dehydrogenase AidB {ECO:0000313|EMBL:KDM65907.1}; EC=1.3.99.- {ECO:0000313|EMBL:KDM65907.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Acyl-CoA dehydrogenase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J5F7_ACIMA
SCNpilot_expt_1000_bf_scaffold_8800_15
unknown

Not on your lists

comp(15724..15948)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8800_16
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16101..17246)
DNA (1146bp) protein (382aa)
Putative mandelate racemase/muconate lactonizing enzyme n=1 Tax=alpha proteobacterium BAL199 RepID=A8U1F5_9PROT rbh
Putative mandelate racemase/muconate lactonizing enzyme {ECO:0000313|EMBL:EDP61884.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative mandelate racemase/muconate-lactonizing protein rbh
SCNpilot_expt_1000_bf_scaffold_8800_17
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17243..17980)
DNA (738bp) protein (246aa)
Putative GntR-family transcriptional regulator n=1 Tax=alpha proteobacterium BAL199 RepID=A8U1F6_9PROT rbh
Putative GntR-family transcriptional regulator {ECO:0000313|EMBL:EDP61885.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_8800_18
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18072..18821
DNA (750bp) protein (250aa)
Permease component of ABC transporter n=4 Tax=Bordetella RepID=K4QDN7_BORBO rbh
taurine ABC transporter permease; K02050 NitT/TauT family transport system permease protein rbh
Permease component of ABC transporter {ECO:0000313|EMBL:CCN23480.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_1000_bf_scaffold_8800_19
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18818..19624
DNA (807bp) protein (269aa)
Putative ABC-transport protein, ATP-binding component n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IS28_BORPD rbh
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein rbh
Putative ABC-transport protein, ATP-binding component {ECO:0000313|EMBL:CAP43248.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_8800_20
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19682..20629
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SGB2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCD93239.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_8800_21
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21189..22256
DNA (1068bp) protein (356aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U1F8_9PROT
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:EDP61886.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
glucose-methanol-choline oxidoreductase
Displaying 21 items

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