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SCNpilot_expt_1000_bf_scaffold_1547

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1547_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..527
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003726BE8
Protease {ECO:0000313|EMBL:AHB48244.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
peptidase U32
SCNpilot_expt_1000_bf_scaffold_1547_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(576..1742)
DNA (1167bp) protein (389aa)
Conserved carboxylase domain protein n=7 Tax=Corynebacterium RepID=C0WJX1_9CORY
carboxylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_1547_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1732..1986)
DNA (255bp) protein (85aa)
pyruvate carboxylase subunit B; K01571 oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3] id=14625706 bin=bin7_NC10_sister species=Roseovarius sp. 217 genus=Roseovarius taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pyruvate carboxylase subunit B (EC:4.1.1.3); K01571 oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3]
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_1547_4
unknown

Not on your lists

comp(2045..2338)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1547_5
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3067..3819)
DNA (753bp) protein (251aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CDZ8_DESTA
ABC transporter {ECO:0000313|EMBL:KJS03693.1}; TaxID=1629716 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
SCNpilot_expt_1000_bf_scaffold_1547_6
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3832..4659)
DNA (828bp) protein (276aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CDZ6_DESTA
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:AFM27787.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
SCNpilot_expt_1000_bf_scaffold_1547_7
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4783..6162)
DNA (1380bp) protein (460aa)
pyruvate carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QLS3_RALPI rbh
Putative biotin carboxylase {ECO:0000313|EMBL:GAF50178.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
SCNpilot_expt_1000_bf_scaffold_1547_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6167..6679)
DNA (513bp) protein (171aa)
Acetyl-CoA carboxylase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QG37_RALPI
biotin carboxyl carrier protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_1547_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(6676..7548)
DNA (873bp) protein (291aa)
Transcriptional regulator, IclR family id=14625722 bin=bin7_NC10_sister species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
IclR family transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
SCNpilot_expt_1000_bf_scaffold_1547_10
unknown

Not on your lists

7978..8274
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1547_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8348..9169)
DNA (822bp) protein (274aa)
Chloride peroxidase {ECO:0000313|EMBL:EEF60940.1}; EC=1.11.1.10 {ECO:0000313|EMBL:EEF60940.1};; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chloride peroxidase; K00433 chloride peroxidase [EC:1.11.1.10] rbh
Chloride peroxidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH19_9BACT rbh
SCNpilot_expt_1000_bf_scaffold_1547_12
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9551..10186)
DNA (636bp) protein (212aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9]
Uracil phosphoribosyltransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TW91_9PROT rbh
SCNpilot_expt_1000_bf_scaffold_1547_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10329..10898)
DNA (570bp) protein (190aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F1CE00
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_1547_14
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10981..13089)
DNA (2109bp) protein (703aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000372DCAE rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:KJC54022.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
alpha/beta hydrolase fold protein rbh
SCNpilot_expt_1000_bf_scaffold_1547_15
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13094..13708)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HD10_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX67002.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1547_16
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13731..14507)
DNA (777bp) protein (259aa)
Membrane protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HDJ0_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:ESZ54758.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
Conserved membrane protein of unknown function rbh
SCNpilot_expt_1000_bf_scaffold_1547_17
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14697..15788
DNA (1092bp) protein (364aa)
alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15]
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFI9_AZOSU
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_1547_18
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15807..16706)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003635D62
Energy transducer TonB {ECO:0000313|EMBL:KJR63923.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
tonB; Ferric siderophore transporter; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_1547_19
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16672..17619)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000369A8FD
Sel1 domain-containing protein repeat-containing protein (fragment); K07126
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:CCB65854.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1547_20
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17619..18299)
DNA (681bp) protein (227aa)
PKHD-type hydroxylase W911_04285 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-] rbh
Fe(II)-dependent oxygenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368B516 rbh
SCNpilot_expt_1000_bf_scaffold_1547_21
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18367..18984)
DNA (618bp) protein (206aa)
Ligand-gated channel protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBC1_9RHIZ
Ligand-gated channel protein {ECO:0000313|EMBL:AHB47803.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_1547_22
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19021..20802)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035F3625
TonB-dependent siderophore receptor {ECO:0000313|EMBL:CDR89924.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_1547_23
unknown

Not on your lists

21142..21414
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1547_24
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21473..22363)
DNA (891bp) protein (297aa)
2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QXS2_9BURK
putative alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_1547_25
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22477..23250)
DNA (774bp) protein (258aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFH09736.1}; EC=1.1.1.162 {ECO:0000313|EMBL:EFH09736.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RSH8_9PROT
short-chain alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1547_26
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(23363..23530)
DNA (168bp) protein (56aa)
molybdopterin oxidoreductase; K07812 trimethylamine-N-oxide reductase (cytochrome c) 2 [EC:1.7.2.3]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00036870C1
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
Displaying 26 items

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