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SCNpilot_expt_1000_bf_scaffold_1681

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1681_1
unknown

Not on your lists

1..312
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1681_2
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(319..1908)
DNA (1590bp) protein (530aa)
TPR domain protein n=3 Tax=Arthrospira platensis RepID=D4ZUU0_ARTPN
peptidase C14 caspase catalytic subunit p20
TPR domain protein {ECO:0000313|EMBL:BAI91555.1}; TaxID=696747 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platensis (strain NIES-39 / IAM M-135) (Spirulina; platensis).;"
SCNpilot_expt_1000_bf_scaffold_1681_3
unknown

Not on your lists

2344..3483
DNA (1140bp) protein (380aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1681_4
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3637..4386
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T8H6_BURPP
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACD20540.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_expt_1000_bf_scaffold_1681_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4694..7714
DNA (3021bp) protein (1007aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5) rbh
Isoleucine--tRNA ligase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BEV1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1681_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7711..8268
DNA (558bp) protein (186aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037C6763
SCNpilot_expt_1000_bf_scaffold_1681_7
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8339..8836
DNA (498bp) protein (166aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ16418.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
SCNpilot_expt_1000_bf_scaffold_1681_8
unknown

Not on your lists

8994..9536
DNA (543bp) protein (181aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1681_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9553..10017)
DNA (465bp) protein (155aa)
DNA polymerase III chi subunit HolC; K02339 DNA polymerase III subunit chi [EC:2.7.7.7]
DNA polymerase III subunit chi n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SA98_9RHIZ
DNA polymerase III subunit chi {ECO:0000313|EMBL:AHB47573.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_1681_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10141..10884
DNA (744bp) protein (248aa)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
arginyl-tRNA-protein transferase (EC:2.3.2.8) rbh
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000369AB5D rbh
SCNpilot_expt_1000_bf_scaffold_1681_11
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11105..11935
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GH30_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL80067.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_1000_bf_scaffold_1681_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11945..12322)
DNA (378bp) protein (126aa)
endoribonuclease L-PSP n=1 Tax=alpha proteobacterium SCGC AAA536-K22 RepID=UPI0003B5E663
tdcF; TdcF protein; K07567 TdcF protein
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_expt_1000_bf_scaffold_1681_13
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12440..13180
DNA (741bp) protein (247aa)
Dienelactone hydrolase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQ67_9PROT rbh
Dienelactone hydrolase {ECO:0000313|EMBL:EDP64966.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
dienelactone hydrolase
SCNpilot_expt_1000_bf_scaffold_1681_14
unknown

Not on your lists

comp(13209..13490)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1681_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13581..15575)
DNA (1995bp) protein (665aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
transketolase; K00615 transketolase [EC:2.2.1.1] rbh
Transketolase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD91_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_1681_16
unknown

Not on your lists

15892..16569
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1681_17
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16588..17502)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7C2_HYPSM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCB67232.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1681_18
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17943..19037
DNA (1095bp) protein (365aa)
Fatty acid desaturase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8T8_9RHIZ rbh
fatty acid desaturase rbh
Fatty acid desaturase {ECO:0000313|EMBL:AGK59453.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_1681_19
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19177..20076
DNA (900bp) protein (300aa)
Cation diffusion facilitator family transporter n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4W1_PARDP rbh
cation diffusion facilitator family transporter rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ABL70555.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_1681_20
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20214..21659)
DNA (1446bp) protein (482aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Pyruvate kinase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BF41_9RHIZ rbh
pyruvate kinase rbh
SCNpilot_expt_1000_bf_scaffold_1681_21
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21656..22045)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BG19_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59035.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_1681_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22168..22434)
DNA (267bp) protein (89aa)
hydroxypyruvate reductase; K00050 hydroxypyruvate reductase [EC:1.1.1.81]
Hydroxypyruvate reductase {ECO:0000313|EMBL:ABS63645.1}; EC=1.1.1.81 {ECO:0000313|EMBL:ABS63645.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Hydroxypyruvate reductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR2_PARL1
Displaying 22 items

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