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SCNpilot_expt_1000_bf_scaffold_3098

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3098_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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261..623
DNA (363bp) protein (121aa)
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 5188
Ribonuclease P protein component n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JXN5_HYPDA
SCNpilot_expt_1000_bf_scaffold_3098_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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620..2518
DNA (1899bp) protein (633aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000377B233 rbh
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
YidC/Oxa1 family membrane protein insertase rbh
SCNpilot_expt_1000_bf_scaffold_3098_3
unknown

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2515..3165
DNA (651bp) protein (217aa)
Probable GTP-binding protein EngB n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=ENGB_MESSB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
engB; ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_3098_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3479..4405
DNA (927bp) protein (309aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
cytochrome-c oxidase (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome C oxidase subunit II n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAX0_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_3098_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4550..5227
DNA (678bp) protein (226aa)
coxA; cytochrome C oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome C oxidase subunit I n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBV0_9RHIZ
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:AHB47962.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_3098_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5173..6156
DNA (984bp) protein (328aa)
cytochrome C oxidase subunit I; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase, subunit I n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUS3_HYPDA
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:ADJ24703.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_3098_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6216..7145
DNA (930bp) protein (310aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
coxE; heme O synthase (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] rbh
Protoheme IX farnesyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBQ4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_3098_8
unknown

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7166..7312
DNA (147bp) protein (49aa)
Uncharacterized protein {ECO:0000313|EMBL:CPR22412.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3098_9
unknown

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7336..8007
DNA (672bp) protein (224aa)
Cytochrome c oxidase assembly protein CtaG n=1 Tax=Nitratireductor indicus C115 RepID=K2NPP2_9RHIZ
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155, ECO:0000313|EMBL:CPR22413.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ctaG; cytochrome c oxidase assembly protein CtaG; K02258 cytochrome c oxidase assembly protein subunit 11
SCNpilot_expt_1000_bf_scaffold_3098_10
unknown

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8070..8975
DNA (906bp) protein (302aa)
Cytochrome c oxidase subunit 3 {ECO:0000313|EMBL:CPR22414.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CPR22414.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
coxC; cytochrome c oxidase subunit III (EC:1.9.3.1); K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] rbh
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037DA6FE rbh
SCNpilot_expt_1000_bf_scaffold_3098_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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9098..10102
DNA (1005bp) protein (335aa)
asparaginase; K01424 L-asparaginase [EC:3.5.1.1] rbh
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002DE349E rbh
Asparaginase {ECO:0000313|EMBL:ETW93095.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
SCNpilot_expt_1000_bf_scaffold_3098_12
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10115..11440)
DNA (1326bp) protein (442aa)
TRAP dicarboxylate transporter n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LK25_DINSH rbh
TRAP dicarboxylate transporter rbh
TRAP dicarboxylate transporter {ECO:0000313|EMBL:ABV93224.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
SCNpilot_expt_1000_bf_scaffold_3098_13
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11437..12129)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LK24_DINSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV93223.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
SCNpilot_expt_1000_bf_scaffold_3098_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(12189..13241)
DNA (1053bp) protein (351aa)
Extracellular solute-binding protein, family 7 id=2247801 bin=GWA2_Methylomirabilis_73_35 species=Rhizobium sp. PDO1-076 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
TRAP dicarboxylate transporter subunit DctP rbh
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_expt_1000_bf_scaffold_3098_15
Yersinia pestis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13390..13665)
DNA (276bp) protein (92aa)
Beta-lactamase domain protein n=1 Tax=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) RepID=B1JKE4_YERPY
beta-lactamase domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AAM83814.1}; TaxID=632 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia pestis.;"
Displaying 15 items

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