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SCNpilot_expt_1000_bf_scaffold_3376

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3376_1
unknown

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comp(7..354)
DNA (348bp) protein (116aa)
fdhF; formate dehydrogenase alpha subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase alpha subunit n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CVN2_AGRT5
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:CPR20806.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3376_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(341..2854)
DNA (2514bp) protein (838aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ02_STAND
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:ADH91121.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_3376_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2862..4838)
DNA (1977bp) protein (659aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036E9EC0
Formate dehydrogenase subunit beta {ECO:0000313|EMBL:AHB49083.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
NAD-dependent formate dehydrogenase beta subunit
SCNpilot_expt_1000_bf_scaffold_3376_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5051..5965)
DNA (915bp) protein (305aa)
LysR family transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B744_9RHIZ
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AGK58853.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_3376_5
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6062..9646)
DNA (3585bp) protein (1195aa)
5-oxoprolinase {ECO:0000313|EMBL:BAQ67676.1}; EC=3.5.2.9 {ECO:0000313|EMBL:BAQ67676.1};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
5-oxoprolinase; K01469 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] rbh
5-oxoprolinase n=1 Tax=Loktanella hongkongensis RepID=UPI0003686768 rbh
SCNpilot_expt_1000_bf_scaffold_3376_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9792..11078)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6M1_9RHIZ rbh
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3376_7
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11084..11791)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUZ4_PUSST
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3376_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11847..12902)
DNA (1056bp) protein (352aa)
Putative transport protein n=1 Tax=Roseovarius sp. 217 RepID=A3W5T9_9RHOB
dctP3; TRAP transporter subunit DctP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3376_9
Candidatus Pelagibacter ubique, Candidatus Pelagibacter, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12950..13762)
DNA (813bp) protein (271aa)
UPI0003C7E8D9 related cluster n=1 Tax=unknown RepID=UPI0003C7E8D9 rbh
hypothetical protein rbh
UPF0317 protein SAR11_0660 {ECO:0000255|HAMAP-Rule:MF_01830}; TaxID=335992 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; Candidatus Pelagibacter.;" source="Pelagibacter ubique (strain HTCC1062).;"
SCNpilot_expt_1000_bf_scaffold_3376_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14042..14692
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEW6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38125.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
amidohydrolase 2
Displaying 10 items

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