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SCNpilot_expt_1000_bf_scaffold_3450

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3450_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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784..1422
DNA (639bp) protein (213aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) {ECO:0000313|EMBL:CCB66110.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCB66110.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J902_HYPSM
SCNpilot_expt_1000_bf_scaffold_3450_2
unknown

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comp(1510..1755)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3450_3
unknown

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comp(1848..3551)
DNA (1704bp) protein (568aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969, ECO:0000313|EMBL:CPR21815.1}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969, ECO:0000313|EMBL:CPR21815.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
mfd; transcription repair coupling protein, ATP-dependent helicase (EC:3.6.1.-); K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
transcription-repair coupling factor n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000361238E
SCNpilot_expt_1000_bf_scaffold_3450_4
unknown

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3795..4808
DNA (1014bp) protein (338aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3450_5
unknown

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5135..5305
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3450_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5306..5578)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCI1_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB65157.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3450_7
unknown

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5821..7938
DNA (2118bp) protein (706aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CPR21817.1}; EC=3.6.4.12 {ECO:0000313|EMBL:CPR21817.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ATP-dependent DNA helicase RecG n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2G5_9RHIZ rbh
ATP-dependent DNA helicase RecG rbh
SCNpilot_expt_1000_bf_scaffold_3450_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7942..9105)
DNA (1164bp) protein (388aa)
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036BDD80 rbh
MFS transporter {ECO:0000313|EMBL:AHB47324.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_3450_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9394..10341)
DNA (948bp) protein (316aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
peptidase M48 Ste24p; K03799 heat shock protein HtpX [EC:3.4.24.-]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378A68F
SCNpilot_expt_1000_bf_scaffold_3450_10
unknown

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10458..10679
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E8X4_BRASB
Uncharacterized protein {ECO:0000313|EMBL:CPR17289.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3450_11
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10715..11485)
DNA (771bp) protein (257aa)
ATP12 ATPase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVD9_9RHIZ
Chaperone {ECO:0000313|EMBL:BAQ17718.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
ATP12 ATPase
SCNpilot_expt_1000_bf_scaffold_3450_12
unknown

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comp(11482..12165)
DNA (684bp) protein (228aa)
haloacid dehalogenase hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Putative haloacid dehalogenase family hydrolase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8G7_HYPSM
HAD family hydrolase {ECO:0000313|EMBL:CPR15706.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3450_13
unknown

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comp(12284..12574)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3450_14
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13001..14944
DNA (1944bp) protein (648aa)
Diguanylate cyclase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LL44_9RHOB
diguanylate cyclase
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_3450_15
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15068..16597
DNA (1530bp) protein (510aa)
AMP-binding enzyme n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQ05_9PROT
AMP-binding enzyme {ECO:0000313|EMBL:EDP64916.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_3450_16
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16773..17600
DNA (828bp) protein (276aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCN6_9RHIZ
Displaying 16 items

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