ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3511

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3511_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..384
DNA (384bp) protein (128aa)
Hypothetical oxidoreductase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DGX5_BRAJP
Short-chain dehydrogenase {ECO:0000313|EMBL:KJC55949.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3511_2
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

561..1976
DNA (1416bp) protein (472aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
multi-sensor signal transduction histidine kinase (EC:2.7.3.-); K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
Two-component sensor histidine kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PKL2_9RHOB
SCNpilot_expt_1000_bf_scaffold_3511_3
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2008..2757
DNA (750bp) protein (250aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHH0_HYPSM
peptidoglycan-binding domain 1 protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:CCB65620.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3511_4
unknown

Not on your lists

comp(2767..3087)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDB9_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:CPR19811.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3511_5
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3273..4571)
DNA (1299bp) protein (433aa)
hemL; glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJY8_9PROT rbh
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:EDP66925.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_3511_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4728..5774
DNA (1047bp) protein (349aa)
dehydrogenase; K13574 uncharacterized oxidoreductase [EC:1.1.1.-] rbh
Blr7581 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89D62_BRADU rbh
Putative malate dehydrogenase {ECO:0000313|EMBL:KGJ63960.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_1000_bf_scaffold_3511_7
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5952..6470
DNA (519bp) protein (173aa)
Photosystem reaction center subunit H n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFN1_9RHIZ
Photosystem reaction center subunit H {ECO:0000313|EMBL:AHB49328.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
PRC-barrel domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3511_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6586..6942
DNA (357bp) protein (119aa)
Photosystem reaction center subunit H n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHR9_9RHIZ
Photosystem reaction center subunit H {ECO:0000313|EMBL:AHB49600.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
PRC-barrel domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3511_9
unknown

Not on your lists

7065..7241
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3511_10
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7199..7864
DNA (666bp) protein (222aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX04625.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
amidohydrolase 2 id=4217943 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase 2
SCNpilot_expt_1000_bf_scaffold_3511_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7988..9535
DNA (1548bp) protein (516aa)
Membrane protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKZ6_9BRAD rbh
Membrane protein {ECO:0000313|EMBL:CCE07134.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
anion transporter
SCNpilot_expt_1000_bf_scaffold_3511_12
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9577..10650
DNA (1074bp) protein (358aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV94_9RHIZ rbh
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EIM27886.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Threonine dehydrogenase and related Zn-dependent dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_3511_13
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10661..11677)
DNA (1017bp) protein (339aa)
phosphate acetyltransferase; K00625 phosphate acetyltransferase [EC:2.3.1.8]
Phosphate acetyltransferase id=3983949 bin=GWC2_Chloroflexi_73_18 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + rbh
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_14
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11772..12917
DNA (1146bp) protein (382aa)
Citrate synthase id=3983948 bin=GWC2_Chloroflexi_73_18 species=Amphimedon queenslandica genus=Amphimedon taxon_order=Haplosclerida taxon_class=Demospongiae phylum=Porifera tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + rbh
citrate synthase 2-like rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_3511_15
Meleagris gallopavo, Meleagris, Galliformes, Aves, Chordata, Metazoa

Not on your lists

comp(12977..13486)
DNA (510bp) protein (170aa)
Uncharacterized protein (Fragment) n=1 Tax=Meleagris gallopavo RepID=H9H2F7_MELGA
Uncharacterized protein {ECO:0000313|Ensembl:ENSMGAP00000018961}; Flags: Fragment;; TaxID=9103 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris.;" source="Meleagris gallopavo (Common turkey).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3511_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13662..14372)
DNA (711bp) protein (237aa)
putative branched-chain amino acid ABC transporter, ATP-binding component (EC:3.6.3.-)
ABC transporter-like protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UBX3_RHIRD
Branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:CDN94647.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_3511_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14359..15003)
DNA (645bp) protein (215aa)
Inner-membrane translocator id=4836282 bin=GWC2_Methylomirabilis_70_16 species=Burkholderia glumae genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15267..15977)
DNA (711bp) protein (237aa)
Branched-chain amino acid ABC-type transport system, permease id=4836283 bin=GWC2_Methylomirabilis_70_16 species=Burkholderia glumae genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Branched-chain amino acid ABC-type transport system, permease
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16010..16177)
DNA (168bp) protein (56aa)
Branched-chain amino acid ABC-type transport system, permease id=14625855 bin=bin7_NC10_sister species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16179..16913)
DNA (735bp) protein (245aa)
ABC transporter ATP-binding protein id=4836284 bin=GWC2_Methylomirabilis_70_16 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
branched-chain amino acid abc transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16936..17667)
DNA (732bp) protein (244aa)
sulfate-transporting ATPase (EC:3.6.3.25); K01995 branched-chain amino acid transport system ATP-binding protein
HmgG id=4836285 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_3511_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17671..18579)
DNA (909bp) protein (303aa)
Branched-chain amino acid ABC transporter, permease protein id=4836286 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Veillonella taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_3511_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18593..19471)
DNA (879bp) protein (293aa)
Branched-chain amino acid ABC-type transport system, permease components id=4836314 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
livH; High-affinity branched-chain amino acid transport system permease protein LivH
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19550..20752)
DNA (1203bp) protein (401aa)
putative ABC-transport systems periplasmic component precursor id=4836315 bin=GWC2_Methylomirabilis_70_16 species=Burkholderia ubonensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_3511_25
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21091..22053
DNA (963bp) protein (321aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIE2_9BRAD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_3511_26
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22135..22983
DNA (849bp) protein (283aa)
TRAP transporter, 4TM/12TM fusion protein id=3668192 bin=GWC2_Syntrophus__56_31 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
TRAP transporter, 4TM/12TM fusion protein
Tax=GWC2_Syntrophus_56_31_curated
SCNpilot_expt_1000_bf_scaffold_3511_27
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23617..23916
DNA (300bp) protein (100aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JRZ8_9PROT
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:EKE77282.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
TRAP transporter, 4TM/12TM fusion protein
Displaying 27 items

View Taxonomy