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SCNpilot_expt_1000_bf_scaffold_3555

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3555_1
unknown

Not on your lists

15..215
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3555_2
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(550..1197)
DNA (648bp) protein (216aa)
Peptidase, C39 family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WEU1_9CAUL
Peptidase, C39 family {ECO:0000313|EMBL:EDX80248.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
ABC transporter; K13409 ATP-binding cassette, subfamily B, bacterial RaxB
SCNpilot_expt_1000_bf_scaffold_3555_3
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1160..2662)
DNA (1503bp) protein (501aa)
Type I protein secretion ATP-binding protein/type I protein secretion transmembrane subunit/type I secretion processing peptidase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H162_CAUCN rbh
ABC transporter; K13409 ATP-binding cassette, subfamily B, bacterial RaxB rbh
ABC transporter, HlyB/MsbA family {ECO:0000313|EMBL:AAK22669.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_expt_1000_bf_scaffold_3555_4
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2659..3903)
DNA (1245bp) protein (415aa)
Type I secretion adaptor protein hlyD n=1 Tax=Caulobacter crescentus (strain NA1000 / CB15N) RepID=B8H161_CAUCN rbh
hylD; type I secretion adaptor protein hlyD; K13408 membrane fusion protein RaxA rbh
Auxiliary transport protein, MFP family {ECO:0000313|EMBL:EDX82089.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
SCNpilot_expt_1000_bf_scaffold_3555_5
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3953..4267)
DNA (315bp) protein (105aa)
Putative transmembrane anti-sigma factor n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AGR1_COLFT
prtR; putative transmembrane anti-sigma factor
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:AEK61674.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_1000_bf_scaffold_3555_6
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4294..5463)
DNA (1170bp) protein (390aa)
adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1]
Adenylate/guanylate cyclase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UEL3_METS4
Adenylate/guanylate cyclase {ECO:0000313|EMBL:ACA16753.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_3555_7
unknown

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comp(5614..5790)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3555_8
unknown

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comp(5857..6066)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3555_9
unknown

Not on your lists

6526..8808
DNA (2283bp) protein (761aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B926_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CPR22375.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3555_10
unknown

Not on your lists

8857..9285
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000362E43E
Uncharacterized protein {ECO:0000313|EMBL:CPR22376.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3555_11
unknown

Not on your lists

9325..10302
DNA (978bp) protein (326aa)
Phosphate acetyltransferase {ECO:0000313|EMBL:CPR20614.1}; EC=2.3.1.8 {ECO:0000313|EMBL:CPR20614.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
phosphate acetyltransferase (EC:2.3.1.8) rbh
phosphate acetyltransferase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000379A079 rbh
SCNpilot_expt_1000_bf_scaffold_3555_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10306..11520
DNA (1215bp) protein (405aa)
acetate kinase; K00925 acetate kinase [EC:2.7.2.1] rbh
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003716757 rbh
SCNpilot_expt_1000_bf_scaffold_3555_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11517..12293
DNA (777bp) protein (259aa)
enoyl-(acyl carrier protein) reductase (EC:1.3.1.10) rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBC8_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_3555_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12496..13128
DNA (633bp) protein (211aa)
Hypothetical oxidoreductase with iron-sulfur subunit n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W1G7_RHISN
Aldehyde or xanthine dehydrogenase, iron-sulfur subunit protein {ECO:0000313|EMBL:KEC81213.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical oxidoreductase with iron-sulfur subunit; K13483 xanthine dehydrogenase YagT iron-sulfur-binding subunit
SCNpilot_expt_1000_bf_scaffold_3555_15
unknown

Not on your lists

comp(13074..13358)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3555_16
unknown

Not on your lists

comp(13413..13718)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3555_17
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13721..14059
DNA (339bp) protein (113aa)
probabable oxidoreductase; K11178 xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
Hydroxylase molybdopterin-containing subunit n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HMK9_9RHIZ
Hydroxylase molybdopterin-containing subunit {ECO:0000313|EMBL:EPE99799.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_3555_18
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14056..16281
DNA (2226bp) protein (742aa)
aerobic-type carbon monoxide dehydrogenase; K11177 xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] rbh
acylaldehyde oxidase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D582BE rbh
Oxidoreductase {ECO:0000313|EMBL:KEC81211.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_expt_1000_bf_scaffold_3555_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16390..17028)
DNA (639bp) protein (213aa)
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hypho
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPX2_HYPDA
Displaying 19 items

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