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SCNpilot_expt_1000_bf_scaffold_9115

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9115_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..475)
DNA (474bp) protein (158aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IR38_METNO
Carbon-monoxide dehydrogenase, large subunit {ECO:0000313|EMBL:KFC67625.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aldehyde oxidase/xanthine dehydrogenase
SCNpilot_expt_1000_bf_scaffold_9115_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(503..991)
DNA (489bp) protein (163aa)
(2Fe-2S)-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YU62_9RHIZ
Carbon-monoxide dehydrogenase small subunit {ECO:0000313|EMBL:KFC67626.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_9115_3
unknown

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2062..2565
DNA (504bp) protein (168aa)
Metallo-beta-lactamase superfamily protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G5J0_9RHIZ
Beta-lactamase domain protein {ECO:0000313|EMBL:CPR18091.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
beta-lactamase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_9115_4
unknown

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comp(2634..3263)
DNA (630bp) protein (210aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9115_5
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3467..4042
DNA (576bp) protein (192aa)
puuB1; gamma-glutamylputrescine oxidoreductase PuuB (EC:1.4.3.-)
Putative oxidoreductase protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RR10_9RHOB
Oxidoreductase {ECO:0000313|EMBL:KEQ04270.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
SCNpilot_expt_1000_bf_scaffold_9115_6
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4374..5855
DNA (1482bp) protein (494aa)
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA {ECO:0000256|HAMAP-Rule:MF_01728}; EC=3.6.3.42 {ECO:0000256|HAMAP-Rule:MF_01728};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
Glucan exporter ATP-binding protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I6X6_RHOVT rbh
glucan exporter ATP-binding protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_1000_bf_scaffold_9115_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6068..8212)
DNA (2145bp) protein (715aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PFW0_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EJW10412.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_9115_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8366..11392)
DNA (3027bp) protein (1009aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003753CC9 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHB50389.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
AsmA family protein
SCNpilot_expt_1000_bf_scaffold_9115_9
unknown

Not on your lists

12443..13240
DNA (798bp) protein (266aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CPR18262.1}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006, ECO:0000313|EMBL:CPR18262.1};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
bacA; UDP-diphosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27] rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037689E9 rbh
SCNpilot_expt_1000_bf_scaffold_9115_10
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13237..13701)
DNA (465bp) protein (155aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI0_PARL1
PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:ABS61813.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_9115_11
unknown

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comp(14376..14450)
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 11 items

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