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SCNpilot_expt_1000_bf_scaffold_9405

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9405_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..387
DNA (387bp) protein (129aa)
hypothetical protein; K13574 uncharacterized oxidoreductase [EC:1.1.1.-]
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D327_BRAJP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_9405_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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495..1199
DNA (705bp) protein (235aa)
demethylmenaquinone methyltransferase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000366A247
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:ETR77595.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9405_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1516..1914
DNA (399bp) protein (133aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BHG3_9RHIZ
succinate dehydrogenase, cytochrome b556 subunit
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:AGK59575.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_9405_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1927..2346
DNA (420bp) protein (140aa)
succinate dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B49941
Succinate dehydrogenase {ECO:0000313|EMBL:KDP71388.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein; K00242 succinate dehydrogenase membrane anchor subunit
SCNpilot_expt_1000_bf_scaffold_9405_5
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2343..3431)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Burkholderia thailandensis RepID=UPI00016A307F
hypothetical protein
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
SCNpilot_expt_1000_bf_scaffold_9405_6
unknown

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3558..4163
DNA (606bp) protein (202aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
sdhA; succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1]
succinate dehydrogenase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037A6C97
SCNpilot_expt_1000_bf_scaffold_9405_7
unknown

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4172..4261
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9405_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4305..5507
DNA (1203bp) protein (401aa)
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] rbh
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209, ECO:0000313|EMBL:CCB65360.1};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J7I0_HYPSM rbh
SCNpilot_expt_1000_bf_scaffold_9405_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5585..6784)
DNA (1200bp) protein (400aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
S-adenosylmethionine synthetase (EC:2.5.1.6) rbh
S-adenosylmethionine synthetase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SE07_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_9405_10
unknown

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comp(6919..7404)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037BA47C
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
TraR/DksA family transcriptional regulator
Displaying 10 items

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