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SCNpilot_expt_1000_bf_scaffold_5183

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5183_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1..759
DNA (759bp) protein (253aa)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein id=2476385 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter periplasmic oligopeptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_expt_1000_bf_scaffold_5183_2
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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864..1928
DNA (1065bp) protein (355aa)
Oligopeptide ABC transporter, permease protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LU47_RUEPO
oligopeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
Oligopeptide ABC transporter, permease protein {ECO:0000313|EMBL:AAV94507.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCNpilot_expt_1000_bf_scaffold_5183_3
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1876..2682
DNA (807bp) protein (269aa)
Oligopeptide ABC transporter, permease protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LU46_RUEPO
oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
Oligopeptide ABC transporter, permease protein {ECO:0000313|EMBL:AAV94508.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCNpilot_expt_1000_bf_scaffold_5183_4
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2969..4288
DNA (1320bp) protein (440aa)
Oligopeptide ABC transporter, ATP-binding protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LU45_RUEPO
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAV94509.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCNpilot_expt_1000_bf_scaffold_5183_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4385..5620
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SIN3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:AHB50398.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5183_6
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5740..5985)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI0003659008
hypothetical protein; K03636 molybdopterin synthase sulfur carrier subunit
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_5183_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6150..8429)
DNA (2280bp) protein (760aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI0003767F71 rbh
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_5183_8
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8432..8908)
DNA (477bp) protein (159aa)
Aldehyde oxidoreductase {ECO:0000313|EMBL:EEX08394.1}; EC=1.2.99.7 {ECO:0000313|EMBL:EEX08394.1};; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibacter lacuscaerulensis ITI-1157.;"
Aldehyde oxidoreductase n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYD2_9RHOB
xanthine dehydrogenase family protein, small subunit
SCNpilot_expt_1000_bf_scaffold_5183_9
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8910..9764)
DNA (855bp) protein (285aa)
Xanthine dehydrogenase family protein, medium subunit n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYD3_9RHOB rbh
Xanthine dehydrogenase family protein, medium subunit {ECO:0000313|EMBL:EEX08395.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibacter lacuscaerulensis ITI-1157.;"
xanthine dehydrogenase family protein, medium subunit rbh
SCNpilot_expt_1000_bf_scaffold_5183_10
unknown

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comp(9981..10808)
DNA (828bp) protein (276aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5183_11
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11023..11535
DNA (513bp) protein (171aa)
MaoC domain protein dehydratase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGS1_XANP2
dehydratase; K14449 mesaconyl-CoA hydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ABS67214.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying 11 items

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