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SCNpilot_expt_1000_bf_scaffold_5395

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5395_1
unknown

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40..498
DNA (459bp) protein (153aa)
molybdopterin biosynthesis protein MoaE; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00035C9A81
Molybdopterin synthase, large subunit {ECO:0000313|EMBL:CPR14801.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_5395_2
unknown

Not on your lists

1193..1795
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_3
unknown

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1820..2353
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_4
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2371..2640)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8I9_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB63563.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5395_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2822..3868)
DNA (1047bp) protein (349aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
16S rRNA methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SI88_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_5395_6
unknown

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comp(3865..4374)
DNA (510bp) protein (170aa)
Cell division protein MraZ n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGJ7_9RHIZ
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
MraZ domain-containing protein; K03925 MraZ protein
SCNpilot_expt_1000_bf_scaffold_5395_7
unknown

Not on your lists

comp(4658..4777)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4859..5533
DNA (675bp) protein (225aa)
rpe; D-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] rbh
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
ribulose-phosphate 3-epimerase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037B482C rbh
SCNpilot_expt_1000_bf_scaffold_5395_9
unknown

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comp(5781..6296)
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_10
unknown

Not on your lists

comp(6501..6926)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_11
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7193..7825
DNA (633bp) protein (211aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JX58_HYPDA
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ADJ23194.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_5395_12
unknown

Not on your lists

comp(7924..10179)
DNA (2256bp) protein (752aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036719F5 rbh
Uncharacterized protein {ECO:0000313|EMBL:CPR20450.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ErfK/YbiS/YcfS/YnhG family protein rbh
SCNpilot_expt_1000_bf_scaffold_5395_13
unknown

Not on your lists

10583..12211
DNA (1629bp) protein (543aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Acyl-CoA synthetase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SE14_9RHIZ rbh
Acyl-CoA synthetase {ECO:0000313|EMBL:CPR14940.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_5395_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12298..13026
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25303.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
short-chain dehydrogenase/reductase SDR
Displaying 14 items

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